Experiment setABuoy_Top for Rhodosporidium toruloides IFO0880

Compare to:

40 hrs High Buoyancy

200 most important genes:

  gene name fitness t score description  
mRNA_4145 12513 -5.0 -3.9 K00641 metX homoserine O-acetyltransferase compare
mRNA_5827 14195 -3.9 -5.0 K04518 pheA2 prephenate dehydratase compare
mRNA_3934 12302 -3.9 -13.4 K01955 carB, CPA2 carbamoyl-phosphate synthase large subunit compare
mRNA_858 9226 -3.6 -1.3 K10599 PRPF19, PRP19 pre-mRNA-processing factor 19 compare
mRNA_3236 11604 -3.6 -4.5 K01755 argH, ASL argininosuccinate lyase compare
mRNA_7115 15483 -3.6 -8.2 K00297 metF, MTHFR methylenetetrahydrofolate reductase (NADPH) compare
mRNA_876 9244 -3.6 -3.6 K00297 metF, MTHFR methylenetetrahydrofolate reductase (NADPH) compare
mRNA_4929 13297 -3.3 -5.0 K01956 carA, CPA1 carbamoyl-phosphate synthase small subunit compare
mRNA_3601 11969 -3.3 -1.2 K11367 CHD1 chromodomain-helicase-DNA-binding protein 1 compare
mRNA_6488 14856 -3.2 -1.6 K01655 LYS21, LYS20 homocitrate synthase compare
mRNA_8325 16693 -3.1 -1.3 KOG1688 Golgi proteins involved in ER retention (RER) compare
mRNA_5891 14259 -3.0 -2.6 K11788 ADE5 phosphoribosylamine--glycine ligase / phosphoribosylformylglycinamidine cyclo-ligase compare
mRNA_1009 9377 -2.8 -14.2 K12659 ARG56 N-acetyl-gamma-glutamyl-phosphate reductase / acetylglutamate kinase compare
mRNA_4885 13253 -2.7 -2.7 K03105 SRP19 signal recognition particle subunit SRP19 compare
mRNA_6786 15154 -2.7 -1.2 K14784 CMS1 protein CMS1 compare
mRNA_1568 9936 -2.6 -1.1 HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383 compare
mRNA_4961 13329 -2.5 -1.4 Hypothetical Protein compare
mRNA_4934 13302 -2.5 -4.2 K00611 OTC, argF, argI ornithine carbamoyltransferase compare
mRNA_698 9066 -2.4 -2.4 K12188 SNF8, EAP30 ESCRT-II complex subunit VPS22 compare
mRNA_8204 16572 -2.3 -1.2 KOG3289 Uncharacterized conserved protein encoded by sequence overlapping the COX4 gene compare
mRNA_6823 15191 -2.2 -2.1 BLAST TNFR/NGFR cysteine-rich region family protein [Rh... compare
mRNA_5682 14050 -2.1 -0.7 K03349 APC2 anaphase-promoting complex subunit 2 compare
mRNA_5889 14257 -2.1 -0.6 K02977 RP-S27Ae, RPS27A small subunit ribosomal protein S27Ae compare
mRNA_6231 14599 -2.1 -3.2 KOG2358 NifU-like domain-containing proteins compare
mRNA_1946 10314 -2.1 -3.2 KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif compare
mRNA_815 9183 -2.1 -1.3 K04555 UBE2G2, UBC7 ubiquitin-conjugating enzyme E2 G2 compare
mRNA_4041 12409 -2.0 -1.0 HMMPfam-Sds3-like-PF08598 compare
mRNA_3736 12104 -1.9 -2.1 K00573 E2.1.1.77, pcm protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
mRNA_8262 16630 -1.9 -5.0 K01958 PC, pyc pyruvate carboxylase compare
mRNA_6771 15139 -1.9 -0.8 Hypothetical Protein compare
mRNA_623 8991 -1.8 -2.3 KOG3158 HSP90 co-chaperone p23 compare
mRNA_2592 10960 -1.8 -1.2 HMMPfam-Protein of unknown function (DUF1762)-PF08574 compare
mRNA_272 8640 -1.8 -2.1 KOG4178 Soluble epoxide hydrolase compare
mRNA_8440 16808 -1.8 -1.3 Hypothetical Protein compare
mRNA_5550 13918 -1.8 -0.9 K09424 REB1 Myb-like DNA-binding protein REB1 compare
mRNA_8457 16825 -1.8 -3.4 K02728 PSMA4 20S proteasome subunit alpha 3 compare
mRNA_2360 10728 -1.8 -2.0 Hypothetical Protein compare
mRNA_7828 16196 -1.7 -7.2 K01940 argG, ASS1 argininosuccinate synthase compare
mRNA_825 9193 -1.7 -1.2 HMMPfam-Modifier of rudimentary (Mod(r)) protein-PF07200,ProSiteProfiles-VPS37 C-terminal domain profile.-PS51314,SUPERFAMILY--SSF140111 compare
mRNA_3664 12032 -1.7 -1.0 K15111 SLC25A26 solute carrier family 25 (mitochondrial S-adenosylmethionine transporter), member 26 compare
mRNA_4595 12963 -1.7 -0.9 KOG2186 Cell growth-regulating nucleolar protein compare
mRNA_3753 12121 -1.7 -9.5 K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase compare
mRNA_6662 15030 -1.7 -1.1 HMMPfam-G-patch domain-PF01585,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-G-patch domain profile.-PS50174,SMART-RNA recognition motif-SM00360,SMART-glycine rich nucleic binding domain-SM00443,SUPERFAMILY--SSF54928 compare
mRNA_1471 9839 -1.7 -0.9 K08874 TRRAP transformation/transcription domain-associated protein compare
mRNA_1589 9957 -1.7 -1.8 Hypothetical Protein compare
mRNA_7855 16223 -1.7 -1.5 K15443 TRM82, WDR4 tRNA (guanine-N(7)-)-methyltransferase subunit TRM82 compare
mRNA_8245 16613 -1.7 -0.9 HMMPfam-Mitochondrial carrier protein-PF00153,ProSiteProfiles-Solute carrier (Solcar) repeat profile.-PS50920,SUPERFAMILY--SSF103506 compare
mRNA_7604 15972 -1.7 -1.5 K09549 PFDN2 prefoldin subunit 2 compare
mRNA_4912 13280 -1.6 -2.1 KOG3309 Ferredoxin compare
mRNA_3639 12007 -1.6 -1.2 K11204 GCLC glutamate--cysteine ligase catalytic subunit compare
mRNA_4899 13267 -1.6 -1.3 KOG4705 Uncharacterized conserved protein compare
mRNA_2232 10600 -1.6 -2.1 Hypothetical Protein compare
mRNA_1396 9764 -1.6 -2.8 Hypothetical Protein compare
mRNA_1457 9825 -1.6 -3.1 K00549 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase compare
mRNA_6876 15244 -1.6 -2.9 Hypothetical Protein compare
mRNA_6020 14388 -1.6 -0.5 SUPERFAMILY--SSF52047 compare
mRNA_1127 9495 -1.6 -3.3 K00143 LYS2 L-aminoadipate-semialdehyde dehydrogenase compare
mRNA_7554 15922 -1.5 -0.6 K07359 CAMKK calcium/calmodulin-dependent protein kinase kinase compare
mRNA_925 9293 -1.5 -1.5 K10704 UBE2V ubiquitin-conjugating enzyme E2 variant compare
mRNA_4874 13242 -1.5 -0.7 KOG2922 Uncharacterized conserved protein compare
mRNA_1518 9886 -1.5 -0.6 K03521 fixA, etfB electron transfer flavoprotein beta subunit compare
mRNA_5363 13731 -1.5 -0.6 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_4263 12631 -1.5 -0.8 K10416 DYNC1LI, DNCLI dynein light intermediate chain 1, cytosolic compare
mRNA_1574 9942 -1.5 -2.0 K06867 K06867 uncharacterized protein compare
mRNA_8214 16582 -1.5 -1.2 BLAST NADH-ubiquinone oxidoreductase 9.5 kDa subunit [R... compare
mRNA_7648 16016 -1.5 -1.1 K01705 LYS4 homoaconitate hydratase compare
mRNA_8199 16567 -1.5 -0.9 Hypothetical Protein compare
mRNA_6777 15145 -1.4 -1.5 Hypothetical Protein compare
mRNA_7571 15939 -1.4 -1.8 K11450 KDM1A, AOF2, LSD1 lysine-specific histone demethylase 1A compare
mRNA_1576 9944 -1.4 -2.6 KOG0737 AAA+-type ATPase compare
mRNA_1615 9983 -1.4 -0.8 K03283 HSPA1_8 heat shock 70kDa protein 1/8 compare
mRNA_2279 10647 -1.4 -4.7 K16369 CHO2 phosphatidylethanolamine N-methyltransferase compare
mRNA_5204 13572 -1.4 -0.8 Hypothetical Protein compare
mRNA_1999 10367 -1.4 -3.4 Hypothetical Protein compare
mRNA_4514 12882 -1.4 -3.2 K03241 EIF2B3 translation initiation factor eIF-2B subunit gamma compare
mRNA_110 8478 -1.4 -3.1 KOG3399 Predicted Yippee-type zinc-binding protein compare
mRNA_1139 9507 -1.4 -2.4 KOG0948 Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily compare
mRNA_7171 15539 -1.3 -4.1 Hypothetical Protein compare
mRNA_914 9282 -1.3 -0.6 K10903 HUS1 HUS1 checkpoint protein compare
mRNA_3511 11879 -1.3 -0.9 K10875 RAD54L, RAD54 DNA repair and recombination protein RAD54 and RAD54-like protein compare
mRNA_5005 13373 -1.3 -1.7 K10956 SEC61A protein transport protein SEC61 subunit alpha compare
mRNA_1606 9974 -1.3 -1.3 Hypothetical Protein compare
mRNA_3839 12207 -1.3 -1.3 BLAST E3 ubiquitin-protein ligase RNF213 [Mus musculus] [Rh... compare
mRNA_7106 15474 -1.3 -1.6 K11313 SUPT3H, SPT3 transcription initiation protein SPT3 compare
mRNA_7869 16237 -1.3 -1.0 KOG4366 Predicted thioesterase compare
mRNA_2811 11179 -1.3 -0.7 Hypothetical Protein compare
mRNA_6198 14566 -1.3 -2.3 BLAST tyrosine kinase domain protein [Rhizoctonia solani AG... compare
mRNA_486 8854 -1.3 -1.5 HMMPfam-Domain of unknown function (DUF202)-PF02656 compare
mRNA_7588 15956 -1.3 -2.2 Hypothetical Protein compare
mRNA_1280 9648 -1.3 -2.3 HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657 compare
mRNA_915 9283 -1.3 -1.0 K01950 E6.3.5.1, NADSYN1, QNS1, nadE NAD+ synthase (glutamine-hydrolysing) compare
mRNA_3716 12084 -1.3 -1.8 K13348 MPV17 protein Mpv17 compare
mRNA_3541 11909 -1.3 -0.9 K01754 E4.3.1.19, ilvA, tdcB threonine dehydratase compare
mRNA_1937 10305 -1.2 -0.4 K18342 OTUD6 OTU domain-containing protein 6 compare
mRNA_8282 16650 -1.2 -1.3 K11359 SPT7 transcriptional activator SPT7 compare
mRNA_2548 10916 -1.2 -3.4 KOG1943 Beta-tubulin folding cofactor D compare
mRNA_2173 10541 -1.2 -1.8 K03950 NDUFA6 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6 compare
mRNA_3565 11933 -1.2 -5.6 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_2286 10654 -1.2 -2.5 Hypothetical Protein compare
mRNA_1250 9618 -1.2 -1.3 Hypothetical Protein compare
mRNA_118 8486 -1.2 -0.9 HMMPfam-Protein of unknown function (DUF1674)-PF07896 compare
mRNA_7062 15430 -1.2 -1.8 HMMPfam-N-acetyltransferase-PF00797,SUPERFAMILY--SSF54001 compare
mRNA_7080 15448 -1.2 -0.7 K12481 RBSN, ZFYVE20 rabenosyn-5 compare
mRNA_3949 12317 -1.2 -2.9 BLAST transmembrane protein, putative [Rhizoctonia solani A... compare
mRNA_7759 16127 -1.2 -2.4 K11824 AP2A AP-2 complex subunit alpha compare
mRNA_25 8393 -1.2 -2.8 Hypothetical Protein compare
mRNA_7995 16363 -1.2 -1.3 Hypothetical Protein compare
mRNA_6553 14921 -1.2 -4.0 SUPERFAMILY--SSF52266 compare
mRNA_1945 10313 -1.2 -3.3 Hypothetical Protein compare
mRNA_3325 11693 -1.2 -1.5 Hypothetical Protein compare
mRNA_3987 12355 -1.2 -2.1 K08576 CAPN7 calpain-7 compare
mRNA_1032 9400 -1.2 -1.7 Hypothetical Protein compare
mRNA_2200 10568 -1.1 -2.5 K11423 SETD2, SET2 histone-lysine N-methyltransferase SETD2 compare
mRNA_1546 9914 -1.1 -2.7 K18040 PTPN23 tyrosine-protein phosphatase non-receptor type 23 compare
mRNA_3988 12356 -1.1 -0.5 Hypothetical Protein compare
mRNA_1840 10208 -1.1 -1.7 Hypothetical Protein compare
mRNA_688 9056 -1.1 -0.8 Hypothetical Protein compare
mRNA_1934 10302 -1.1 -6.7 HMMPfam-Cryptococcal mannosyltransferase 1-PF11735 compare
mRNA_6862 15230 -1.1 -2.5 KOG0754 Mitochondrial oxodicarboxylate carrier protein compare
mRNA_4022 12390 -1.1 -1.8 KOG2661 Peptidase family M48 compare
mRNA_7739 16107 -1.1 -6.2 K20476 RIC1 RAB6A-GEF complex partner protein 1 compare
mRNA_3254 11622 -1.1 -0.4 K12161 URM1 ubiquitin related modifier 1 compare
mRNA_8316 16684 -1.1 -1.0 KOG2923 Uncharacterized conserved protein compare
mRNA_988 9356 -1.1 -0.8 BLAST glycerol-3-phosphate O-acyltransferase [Sanghuangporu... compare
mRNA_3015 11383 -1.1 -0.2 KOG3252 Uncharacterized conserved protein compare
mRNA_8046 16414 -1.1 -3.6 BLAST myosin tail domain protein [Rhizoctonia solani AG-3 R... compare
mRNA_7851 16219 -1.1 -1.9 KOG0142 Isopentenyl pyrophosphate-dimethylallyl pyrophosphate isomerase compare
mRNA_4642 13010 -1.1 -1.1 Hypothetical Protein compare
mRNA_366 8734 -1.1 -2.0 HMMPfam-Thioredoxin-like-PF13905,SUPERFAMILY--SSF52833 compare
mRNA_6830 15198 -1.1 -3.3 K07893 RAB6A Ras-related protein Rab-6A compare
mRNA_6410 14778 -1.1 -3.0 HMMPfam-Peptidase inhibitor I9-PF05922,SUPERFAMILY--SSF54897 compare
mRNA_5912 14280 -1.1 -1.1 K11375 ELP4 elongator complex protein 4 compare
mRNA_6568 14936 -1.1 -1.2 BLAST Protein IWS1 homolog A [Rhizoctonia solani] compare
mRNA_1732 10100 -1.0 -3.2 Hypothetical Protein compare
mRNA_5275 13643 -1.0 -1.9 K06688 UBE2C, UBC11 ubiquitin-conjugating enzyme E2 C compare
mRNA_4792 13160 -1.0 -3.5 Hypothetical Protein compare
mRNA_5732 14100 -1.0 -2.4 HMMPfam-bZIP transcription factor-PF00170,HMMPfam-Minimal binding motif of Hap4 for binding to Hap2/3/5-PF10297,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,SUPERFAMILY--SSF57959 compare
mRNA_3462 11830 -1.0 -0.4 K17978 NUM1 nuclear migration protein NUM1 compare
mRNA_613 8981 -1.0 -2.4 K10631 TOPORS E3 ubiquitin-protein ligase Topors compare
mRNA_5745 14113 -1.0 -2.2 K11665 INO80, INOC1 DNA helicase INO80 compare
mRNA_2005 10373 -1.0 -1.8 K08286 E2.7.11.- protein-serine/threonine kinase compare
mRNA_4380 12748 -1.0 -3.8 K00550 OPI3 methylene-fatty-acyl-phospholipid synthase compare
mRNA_2701 11069 -1.0 -0.7 HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448 compare
mRNA_7790 16158 -1.0 -1.5 Hypothetical Protein compare
mRNA_6385 14753 -1.0 -0.3 K03107 SRP68 signal recognition particle subunit SRP68 compare
mRNA_6402 14770 -1.0 -1.0 Hypothetical Protein compare
mRNA_6438 14806 -1.0 -2.8 K15456 KTI12 protein KTI12 compare
mRNA_7331 15699 -1.0 -0.4 KOG1666 V-SNARE compare
mRNA_219 8587 -1.0 -3.3 Hypothetical Protein compare
mRNA_3957 12325 -1.0 -2.9 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_7907 16275 -1.0 -7.0 K14951 ATP13A3_4_5 cation-transporting ATPase 13A3/4/5 compare
mRNA_1863 10231 -1.0 -4.1 HMMPfam-Metallo-beta-lactamase superfamily-PF00753,SMART-Metallo-beta-lactamase superfamily-SM00849,SUPERFAMILY--SSF56281 compare
mRNA_5762 14130 -1.0 -2.1 SUPERFAMILY--SSF47095 compare
mRNA_3924 12292 -1.0 -0.2 KOG1993 Nuclear transport receptor KAP120 (importin beta superfamily) compare
mRNA_6401 14769 -1.0 -0.8 HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112 compare
mRNA_5477 13845 -1.0 -0.6 K20179 VPS11, PEP5 vacuolar protein sorting-associated protein 11 compare
mRNA_1217 9585 -1.0 -2.5 K10580 UBE2N, BLU, UBC13 ubiquitin-conjugating enzyme E2 N compare
mRNA_7975 16343 -1.0 -3.4 KOG0762 Mitochondrial carrier protein compare
mRNA_6938 15306 -1.0 -1.3 SUPERFAMILY--SSF56801 compare
mRNA_7223 15591 -1.0 -2.0 K19983 EXOC1, SEC3 exocyst complex component 1 compare
mRNA_8010 16378 -1.0 -0.8 K15414 C1QBP complement component 1 Q subcomponent-binding protein, mitochondrial compare
mRNA_3907 12275 -1.0 -1.1 Hypothetical Protein compare
mRNA_8138 16506 -1.0 -2.3 Hypothetical Protein compare
mRNA_6784 15152 -1.0 -0.9 Hypothetical Protein compare
mRNA_6626 14994 -1.0 -1.8 Hypothetical Protein compare
mRNA_1096 9464 -1.0 -1.0 KOG1611 Predicted short chain-type dehydrogenase compare
mRNA_8216 16584 -1.0 -1.0 K14376 PAP poly(A) polymerase compare
mRNA_4561 12929 -1.0 -2.1 K06990 MEMO1 MEMO1 family protein compare
mRNA_3894 12262 -0.9 -2.2 SUPERFAMILY--SSF54695 compare
mRNA_3885 12253 -0.9 -2.5 K00773 tgt, QTRT1 queuine tRNA-ribosyltransferase compare
mRNA_635 9003 -0.9 -2.3 KOG1470 Phosphatidylinositol transfer protein PDR16 and related proteins compare
mRNA_8351 16719 -0.9 -0.9 K14303 NUP160, NUP120 nuclear pore complex protein Nup160 compare
mRNA_4917 13285 -0.9 -0.6 KOG2920 Predicted methyltransferase compare
mRNA_2797 11165 -0.9 -1.4 HMMPfam-CBP4-PF07960 compare
mRNA_4708 13076 -0.9 -3.2 BLAST expressed protein [Cryptococcus neoformans var. neofo... compare
mRNA_7152 15520 -0.9 -3.1 Hypothetical Protein compare
mRNA_8013 16381 -0.9 -2.9 SUPERFAMILY--SSF58113 compare
mRNA_2771 11139 -0.9 -1.7 KOG4072 Signal peptidase complex, subunit SPC25 compare
mRNA_5996 14364 -0.9 -3.5 BLAST ran GTPase activating protein 1 [Capsaspora owcza... compare
mRNA_5171 13539 -0.9 -3.5 KOG2262 Sexual differentiation process protein ISP4 compare
mRNA_7977 16345 -0.9 -1.8 K17757 CARKD ATP-dependent NAD(P)H-hydrate dehydratase compare
mRNA_4317 12685 -0.9 -1.2 K07025 K07025 putative hydrolase of the HAD superfamily compare
mRNA_6652 15020 -0.9 -0.1 K02975 RP-S25e, RPS25 small subunit ribosomal protein S25e compare
mRNA_6534 14902 -0.9 -0.3 HMMPfam-Opy2 protein-PF09463 compare
mRNA_4101 12469 -0.9 -1.1 Hypothetical Protein compare
mRNA_6905 15273 -0.9 -1.8 K14300 NUP133 nuclear pore complex protein Nup133 compare
mRNA_7915 16283 -0.9 -3.0 SUPERFAMILY--SSF51445 compare
mRNA_260 8628 -0.9 -2.6 KOG2534 DNA polymerase IV (family X) compare
mRNA_5244 13612 -0.9 -2.5 HMMPfam-Glycosyl Hydrolase Family 88-PF07470,SUPERFAMILY--SSF48208 compare
mRNA_4186 12554 -0.9 -1.2 KOG2806 Chitinase compare
mRNA_4094 12462 -0.9 -1.0 KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) compare
mRNA_7416 15784 -0.9 -0.0 Hypothetical Protein compare
mRNA_7829 16197 -0.9 -0.9 K06126 COQ6 ubiquinone biosynthesis monooxygenase Coq6 compare
mRNA_7866 16234 -0.9 -1.1 Hypothetical Protein compare
mRNA_7658 16026 -0.9 -4.1 KOG1398 Uncharacterized conserved protein compare
mRNA_3453 11821 -0.9 -0.4 KOG2959 Transcriptional regulator compare
mRNA_6247 14615 -0.9 -0.5 K01551 arsA, ASNA1 arsenite-transporting ATPase compare
mRNA_4590 12958 -0.9 -1.8 Hypothetical Protein compare
mRNA_2662 11030 -0.9 -2.6 Interpro Bacterial protein of unknown function (HtrL_YibB) compare
mRNA_720 9088 -0.9 -2.7 K00993 EPT1 ethanolaminephosphotransferase compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in buoyancy on lipid accumulation experiments

For buoyancy on lipid accumulation CN120 across organisms