Experiment setABuoy_YPD_All for Rhodosporidium toruloides IFO0880

Compare to:

40 hrs No Buoyancy Separation

200 most important genes:

  gene name fitness t score description  
mRNA_125 8493 -5.0 -1.5 HMMPfam-Alpha/beta hydrolase family-PF12695,SUPERFAMILY--SSF53474 compare
mRNA_3815 12183 -4.6 -1.2 K06631 PLK1 polo-like kinase 1 compare
mRNA_3383 11751 -4.2 -1.1 HMMPfam-BSD domain-PF03909,ProSiteProfiles-BSD domain profile.-PS50858,SMART-domain in transcription factors and synapse-associated proteins-SM00751,SUPERFAMILY--SSF140383 compare
mRNA_3897 12265 -4.2 -2.2 K00459 ncd2, npd nitronate monooxygenase compare
mRNA_6163 14531 -4.1 -1.9 HMMPfam-Autophagy protein 16 (ATG16)-PF08614 compare
mRNA_7852 16220 -4.1 -1.1 Hypothetical Protein compare
mRNA_1747 10115 -4.0 -2.0 Hypothetical Protein compare
mRNA_8214 16582 -3.9 -1.0 BLAST NADH-ubiquinone oxidoreductase 9.5 kDa subunit [R... compare
mRNA_2699 11067 -3.8 -1.8 K08066 NFYC nuclear transcription factor Y, gamma compare
mRNA_3254 11622 -3.8 -1.0 K12161 URM1 ubiquitin related modifier 1 compare
mRNA_4618 12986 -3.8 -1.0 Hypothetical Protein compare
mRNA_6498 14866 -3.7 -2.2 K00226 pyrD dihydroorotate dehydrogenase (fumarate) compare
mRNA_4716 13084 -3.6 -2.1 SUPERFAMILY--SSF55753 compare
mRNA_2815 11183 -3.6 -1.2 K09699 DBT, bkdB 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) compare
mRNA_7500 15868 -3.6 -1.8 KOG2062 26S proteasome regulatory complex, subunit RPN2/PSMD1 compare
mRNA_3506 11874 -3.5 -2.1 HMMPfam-Asp/Glu/Hydantoin racemase-PF01177 compare
mRNA_1285 9653 -3.5 -1.9 Interpro Ribosomal protein 60S L18 and 50S L18e 0 compare
mRNA_5080 13448 -3.5 -2.1 K12486 SMAP stromal membrane-associated protein compare
mRNA_5991 14359 -3.5 -1.8 Hypothetical Protein compare
mRNA_514 8882 -3.4 -1.7 KOG0417 Ubiquitin-protein ligase compare
mRNA_3312 11680 -3.3 -1.5 Hypothetical Protein compare
mRNA_7679 16047 -3.3 -1.1 K12861 BCAS2 pre-mRNA-splicing factor SPF27 compare
mRNA_1606 9974 -3.2 -1.3 Hypothetical Protein compare
mRNA_8471 16839 -3.1 -2.6 Hypothetical Protein compare
mRNA_4644 13012 -3.1 -1.7 Hypothetical Protein compare
mRNA_4707 13075 -3.1 -1.6 KOG4431 Uncharacterized protein, induced by hypoxia compare
mRNA_5873 14241 -3.1 -2.4 K00761 upp, UPRT uracil phosphoribosyltransferase compare
mRNA_8371 16739 -3.1 -0.8 HMMPfam-GPR1/FUN34/yaaH family-PF01184 compare
mRNA_8246 16614 -3.1 -1.1 Hypothetical Protein compare
mRNA_1471 9839 -3.1 -0.8 K08874 TRRAP transformation/transcription domain-associated protein compare
mRNA_7858 16226 -3.1 -1.4 K11673 ACTR8, ARP8, INO80N actin-related protein 8 compare
mRNA_5981 14349 -3.0 -1.4 Hypothetical Protein compare
mRNA_968 9336 -3.0 -2.1 KOG0970 DNA polymerase alpha, catalytic subunit compare
mRNA_7116 15484 -3.0 -7.9 K04393 CDC42 cell division control protein 42 compare
mRNA_7087 15455 -3.0 -1.2 Hypothetical Protein compare
mRNA_2741 11109 -3.0 -0.9 HMMPfam-Telomeric single stranded DNA binding POT1/CDC13-PF02765,SUPERFAMILY--SSF50249 compare
mRNA_7822 16190 -3.0 -1.1 Hypothetical Protein compare
mRNA_5560 13928 -3.0 -1.1 BLAST PROTEIN D2013.6 [Ceraceosorus bombacis] compare
mRNA_576 8944 -2.9 -0.8 K20182 VPS33 vacuolar protein sorting-associated protein 33 compare
mRNA_4369 12737 -2.9 -0.9 K03671 trxA thioredoxin 1 compare
mRNA_2097 10465 -2.8 -0.7 K03217 yidC, spoIIIJ, OXA1, ccfA YidC/Oxa1 family membrane protein insertase compare
mRNA_6846 15214 -2.8 -1.5 K02603 ORC1 origin recognition complex subunit 1 compare
mRNA_1921 10289 -2.8 -2.0 KOG4373 Predicted 3'-5' exonuclease compare
mRNA_645 9013 -2.8 -0.9 KOG3104 Mod5 protein sorting/negative effector of RNA Pol III synthesis compare
mRNA_1290 9658 -2.8 -1.2 K03872 TCEB1 transcription elongation factor B, polypeptide 1 compare
mRNA_233 8601 -2.8 -1.9 K06287 maf septum formation protein compare
mRNA_8404 16772 -2.7 -1.1 Hypothetical Protein compare
mRNA_84 8452 -2.7 -0.6 K01522 FHIT bis(5'-adenosyl)-triphosphatase compare
mRNA_6310 14678 -2.7 -0.7 Hypothetical Protein compare
mRNA_7219 15587 -2.7 -1.0 K15053 CHMP7 charged multivesicular body protein 7 compare
mRNA_7666 16034 -2.7 -1.2 K20184 VPS41 vacuolar protein sorting-associated protein 41 compare
mRNA_7103 15471 -2.7 -0.9 Hypothetical Protein compare
mRNA_8226 16594 -2.7 -1.4 KOG0849 Transcription factor PRD and related proteins, contain PAX and HOX domains compare
mRNA_5863 14231 -2.7 -1.4 K09281 K09281 copper-fist transcription factor compare
mRNA_205 8573 -2.7 -1.1 KOG4267 Predicted membrane protein compare
mRNA_8067 16435 -2.7 -1.8 K12399 AP3S AP-3 complex subunit sigma compare
mRNA_7113 15481 -2.7 -0.9 Hypothetical Protein compare
mRNA_1026 9394 -2.7 -2.0 HMMPfam-Protein of unknown function (DUF3317)-PF11779 compare
mRNA_523 8891 -2.7 -1.3 K11644 SIN3A paired amphipathic helix protein Sin3a compare
mRNA_4290 12658 -2.7 -0.3 Hypothetical Protein compare
mRNA_358 8726 -2.7 -2.9 KOG1515 Arylacetamide deacetylase compare
mRNA_8467 16835 -2.7 -0.9 Hypothetical Protein compare
mRNA_7869 16237 -2.6 -1.7 KOG4366 Predicted thioesterase compare
mRNA_4049 12417 -2.6 -2.3 HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685 compare
mRNA_578 8946 -2.6 -1.3 K05687 PARK7 protein DJ-1 compare
mRNA_1129 9497 -2.6 -0.9 K12391 AP1G1 AP-1 complex subunit gamma-1 compare
mRNA_1280 9648 -2.6 -0.8 HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657 compare
mRNA_1429 9797 -2.6 -1.2 HMMPfam-Protein of unknown function (DUF3237)-PF11578 compare
mRNA_8048 16416 -2.6 -1.4 Hypothetical Protein compare
mRNA_1870 10238 -2.6 -0.4 K18043 OCA1 tyrosine-protein phosphatase OCA1 compare
mRNA_743 9111 -2.6 -1.8 K08493 VTI1 vesicle transport through interaction with t-SNAREs 1 compare
mRNA_4662 13030 -2.6 -1.0 K20352 TMED10, ERV25 p24 family protein delta-1 compare
mRNA_7428 15796 -2.5 -1.3 Interpro XLF-Cernunnos, XRcc4-like factor, NHEJ component compare
mRNA_3687 12055 -2.5 -1.1 K14837 NOP12 nucleolar protein 12 compare
mRNA_7236 15604 -2.5 -1.1 Hypothetical Protein compare
mRNA_1282 9650 -2.5 -0.5 Hypothetical Protein compare
mRNA_1686 10054 -2.5 -1.6 BLAST putative protein [Melanopsichium pennsylvanicum 4] compare
mRNA_1560 9928 -2.5 -1.8 HMMPfam-Bromodomain-PF00439,ProSiteProfiles-Bromodomain profile.-PS50014,SMART-bromo domain-SM00297,SUPERFAMILY--SSF47370 compare
mRNA_7480 15848 -2.5 -0.6 K01868 TARS, thrS threonyl-tRNA synthetase compare
mRNA_4866 13234 -2.5 -0.9 KOG2881 Predicted membrane protein compare
mRNA_8199 16567 -2.4 -0.9 Hypothetical Protein compare
mRNA_7017 15385 -2.4 -1.3 K03574 mutT, NUDT15, MTH2 8-oxo-dGTP diphosphatase compare
mRNA_8209 16577 -2.4 -2.5 K17618 UBLCP1 ubiquitin-like domain-containing CTD phosphatase 1 compare
mRNA_2616 10984 -2.4 -2.0 KOG4076 Regulator of ATP-sensitive K+ channels Alpha-endosulfine/ARPP-19 and related cAMP-regulated phosphoproteins compare
mRNA_6927 15295 -2.4 -2.2 Hypothetical Protein compare
mRNA_3580 11948 -2.4 -0.9 KOG0715 Molecular chaperone (DnaJ superfamily) compare
mRNA_7796 16164 -2.4 -1.1 K11322 EPC enhancer of polycomb-like protein compare
mRNA_272 8640 -2.4 -1.0 KOG4178 Soluble epoxide hydrolase compare
mRNA_6463 14831 -2.4 -0.6 K10427 DCTN5 dynactin 5 compare
mRNA_7917 16285 -2.4 -3.3 K18477 RMT2 type IV protein arginine methyltransferase compare
mRNA_2407 10775 -2.4 -1.2 K10880 XRCC3 DNA-repair protein XRCC3 compare
mRNA_6221 14589 -2.4 -2.5 HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,SMART-Broad-Complex, Tramtrack and Bric a brac-SM00225,SUPERFAMILY--SSF54695 compare
mRNA_6585 14953 -2.4 -2.3 K14850 RRP8 ribosomal RNA-processing protein 8 compare
mRNA_6208 14576 -2.4 -2.3 K00006 GPD1 glycerol-3-phosphate dehydrogenase (NAD+) compare
mRNA_1 8369 -2.3 -1.5 K12198 CHMP5, VPS60 charged multivesicular body protein 5 compare
mRNA_5928 14296 -2.3 -1.7 KOG3472 Predicted small membrane protein compare
mRNA_4213 12581 -2.3 -0.6 K01673 cynT, can carbonic anhydrase compare
mRNA_5024 13392 -2.3 -1.1 K11124 SMG6, EST1A protein SMG6 compare
mRNA_1568 9936 -2.3 -0.6 HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383 compare
mRNA_4641 13009 -2.3 -1.9 KOG1161 Protein involved in vacuolar polyphosphate accumulation, contains SPX domain compare
mRNA_2211 10579 -2.3 -0.8 K09486 HYOU1 hypoxia up-regulated 1 compare
mRNA_2550 10918 -2.3 -4.3 KOG3116 Predicted C3H1-type Zn-finger protein compare
mRNA_2500 10868 -2.3 -0.9 Hypothetical Protein compare
mRNA_8437 16805 -2.3 -0.2 K16948 CDC12 cell division control protein 12 compare
mRNA_5544 13912 -2.3 -1.7 Hypothetical Protein compare
mRNA_6125 14493 -2.3 -1.4 KOG1477 SPRY domain-containing proteins compare
mRNA_1840 10208 -2.3 -1.8 Hypothetical Protein compare
mRNA_5161 13529 -2.3 -1.7 Hypothetical Protein compare
mRNA_8036 16404 -2.3 -0.6 K01942 HLCS biotin--protein ligase compare
mRNA_3251 11619 -2.2 -1.0 K19986 EXOC8, SEC84 exocyst complex component 8 compare
mRNA_6114 14482 -2.2 -1.2 Hypothetical Protein compare
mRNA_1922 10290 -2.2 -1.1 Hypothetical Protein compare
mRNA_7963 16331 -2.2 -3.8 HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232 compare
mRNA_6364 14732 -2.2 -1.1 BLAST putative protein [Melanopsichium pennsylvanicum 4] compare
mRNA_7229 15597 -2.2 -0.2 Hypothetical Protein compare
mRNA_1483 9851 -2.2 -0.5 BLAST Protein priB [Grifola frondosa] compare
mRNA_7674 16042 -2.2 -1.1 SUPERFAMILY--SSF48371 compare
mRNA_3664 12032 -2.2 -0.3 K15111 SLC25A26 solute carrier family 25 (mitochondrial S-adenosylmethionine transporter), member 26 compare
mRNA_8400 16768 -2.2 -0.8 K12189 VPS25, EAP20 ESCRT-II complex subunit VPS25 compare
mRNA_3639 12007 -2.2 -0.3 K11204 GCLC glutamate--cysteine ligase catalytic subunit compare
mRNA_7284 15652 -2.2 -1.5 KOG0537 Cytochrome b5 compare
mRNA_3313 11681 -2.2 -0.6 K00030 IDH3 isocitrate dehydrogenase (NAD+) compare
mRNA_7343 15711 -2.2 -0.8 K04798 pfdB, PFDN6 prefoldin beta subunit compare
mRNA_6149 14517 -2.2 -2.5 Hypothetical Protein compare
mRNA_7396 15764 -2.2 -1.2 K18584 ACTR3, ARP3 actin-related protein 3 compare
mRNA_6211 14579 -2.2 -1.7 Hypothetical Protein compare
mRNA_5561 13929 -2.2 -2.3 Hypothetical Protein compare
mRNA_1547 9915 -2.2 -1.1 K14402 CPSF2, CFT2 cleavage and polyadenylation specificity factor subunit 2 compare
mRNA_2797 11165 -2.1 -1.7 HMMPfam-CBP4-PF07960 compare
mRNA_825 9193 -2.1 -0.9 HMMPfam-Modifier of rudimentary (Mod(r)) protein-PF07200,ProSiteProfiles-VPS37 C-terminal domain profile.-PS51314,SUPERFAMILY--SSF140111 compare
mRNA_5125 13493 -2.1 -1.1 Interpro Protein of unknown function (DUF3431) compare
mRNA_7577 15945 -2.1 -1.2 Hypothetical Protein compare
mRNA_3489 11857 -2.1 -0.5 BLAST NADH-ubiquinone oxidoreductase, 17.2kDa subunit [... compare
mRNA_3988 12356 -2.1 -0.6 Hypothetical Protein compare
mRNA_3729 12097 -2.1 -1.8 K15280 SLC35C2 solute carrier family 35, member C2 compare
mRNA_7178 15546 -2.1 -1.5 KOG0417 Ubiquitin-protein ligase compare
mRNA_2748 11116 -2.1 -1.5 KOG3772 M-phase inducer phosphatase compare
mRNA_5616 13984 -2.1 -0.8 HMMPfam-GRF zinc finger-PF06839 compare
mRNA_988 9356 -2.1 -0.8 BLAST glycerol-3-phosphate O-acyltransferase [Sanghuangporu... compare
mRNA_4521 12889 -2.1 -1.9 SUPERFAMILY--SSF117018 compare
mRNA_134 8502 -2.1 -2.1 Hypothetical Protein compare
mRNA_4629 12997 -2.1 -3.8 K11971 RNF14, ARA54 E3 ubiquitin-protein ligase RNF14 compare
mRNA_6403 14771 -2.1 -1.8 HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112 compare
mRNA_2521 10889 -2.1 -0.5 BLAST beta-glucosidase 1 precursor [Aspergillus rambellii] compare
mRNA_463 8831 -2.1 -1.0 Hypothetical Protein compare
mRNA_1130 9498 -2.1 -0.7 KOG1773 Stress responsive protein compare
mRNA_6402 14770 -2.0 -0.8 Hypothetical Protein compare
mRNA_2438 10806 -2.0 -0.3 HMMPfam-Predicted coiled-coil protein (DUF2205)-PF10224 compare
mRNA_5327 13695 -2.0 -0.7 Hypothetical Protein compare
mRNA_3107 11475 -2.0 -2.1 K11412 SIRT2, SIR2L2 NAD-dependent deacetylase sirtuin 2 compare
mRNA_6775 15143 -2.0 -0.5 K14784 CMS1 protein CMS1 compare
mRNA_1522 9890 -2.0 -2.0 K06685 MOB1, Mats MOB kinase activator 1 compare
mRNA_7453 15821 -2.0 0.1 K14407 CSTF2, RNA15 cleavage stimulation factor subunit 2 compare
mRNA_3839 12207 -2.0 -0.7 BLAST E3 ubiquitin-protein ligase RNF213 [Mus musculus] [Rh... compare
mRNA_2511 10879 -2.0 -0.5 Hypothetical Protein compare
mRNA_1153 9521 -2.0 -1.3 K13513 LCLAT1, AGPAT8 lysocardiolipin and lysophospholipid acyltransferase compare
mRNA_5980 14348 -2.0 -1.1 K12592 C1D, LRP1 exosome complex protein LRP1 compare
mRNA_1557 9925 -2.0 -3.7 HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383 compare
mRNA_7073 15441 -2.0 -1.2 HMMPfam-Domain of unknown function DUF77-PF01910,SUPERFAMILY--SSF89957,TIGRFAM-TIGR00106 uncharacterized protein, MTH1187 family-TIGR00106 compare
mRNA_4673 13041 -2.0 -0.8 K01069 E3.1.2.6, gloB hydroxyacylglutathione hydrolase compare
mRNA_4292 12660 -2.0 -2.1 HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899 compare
mRNA_8152 16520 -2.0 -1.4 KOG2944 Glyoxalase compare
mRNA_4503 12871 -2.0 -0.9 K12397 AP3B AP-3 complex subunit beta compare
mRNA_5370 13738 -2.0 -0.9 K18443 GBF1 golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 compare
mRNA_4296 12664 -2.0 -2.6 Hypothetical Protein compare
mRNA_2055 10423 -2.0 -2.3 KOG2817 Predicted E3 ubiquitin ligase compare
mRNA_3968 12336 -2.0 -1.0 HMMPfam-Thaumatin family-PF00314,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870 compare
mRNA_7417 15785 -2.0 -0.8 K03353 APC6, CDC16 anaphase-promoting complex subunit 6 compare
mRNA_3248 11616 -2.0 -2.2 Hypothetical Protein compare
mRNA_5363 13731 -2.0 -0.4 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_1701 10069 -2.0 -1.3 K03522 fixB, etfA electron transfer flavoprotein alpha subunit compare
mRNA_1151 9519 -2.0 -0.5 Hypothetical Protein compare
mRNA_2303 10671 -2.0 -2.3 Hypothetical Protein compare
mRNA_3819 12187 -2.0 -0.7 HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232 compare
mRNA_5082 13450 -2.0 -0.3 K10696 BRE1 E3 ubiquitin-protein ligase BRE1 compare
mRNA_5624 13992 -2.0 -0.5 KOG1611 Predicted short chain-type dehydrogenase compare
mRNA_4917 13285 -1.9 -0.9 KOG2920 Predicted methyltransferase compare
mRNA_2817 11185 -1.9 -1.2 KOG2946 Uncharacterized conserved protein compare
mRNA_8097 16465 -1.9 -1.2 KOG0118 FOG RRM domain compare
mRNA_8008 16376 -1.9 -0.7 BLAST CAMK/CAMKL protein kinase [Microbotryum lychnidis-dio... compare
mRNA_6818 15186 -1.9 -0.8 KOG0729 26S proteasome regulatory complex, ATPase RPT1 compare
mRNA_1901 10269 -1.9 -0.6 HMMPfam-Spo7-like protein-PF03907 compare
mRNA_3656 12024 -1.9 -0.4 Hypothetical Protein compare
mRNA_1741 10109 -1.9 -1.4 HMMPfam-Calcipressin-PF04847 compare
mRNA_5571 13939 -1.9 -0.6 K14546 UTP5, WDR43 U3 small nucleolar RNA-associated protein 5 compare
mRNA_3244 11612 -1.9 -1.0 Hypothetical Protein compare
mRNA_1969 10337 -1.9 -0.7 K14961 RBBP5, SWD1, CPS50 COMPASS component SWD1 compare
mRNA_3500 11868 -1.9 -0.6 KOG2519 5'-3' exonuclease compare
mRNA_6141 14509 -1.9 -0.8 HMMPfam-GGL domain-PF00631,SUPERFAMILY--SSF48670 compare
mRNA_4836 13204 -1.9 -0.9 BLAST NEK protein kinase [Microbotryum lychnidis-dioicae p1... compare
mRNA_7519 15887 -1.9 -0.7 HMMPfam-Protoglobin-PF11563 compare
mRNA_726 9094 -1.9 -1.2 HMMPfam-Ferritin-like domain-PF13668 compare
mRNA_1032 9400 -1.9 -1.0 Hypothetical Protein compare
mRNA_5966 14334 -1.9 -1.1 KOG1950 Glycosyl transferase, family 8 - glycogenin compare
mRNA_1080 9448 -1.9 -3.0 Hypothetical Protein compare
mRNA_2371 10739 -1.9 -0.4 BLAST Tubulin beta-2 chain [Grifola frondosa] compare
mRNA_8165 16533 -1.9 -2.3 HMMPfam-Saccharopine dehydrogenase-PF03435,SUPERFAMILY--SSF51735 compare
mRNA_7782 16150 -1.9 -0.8 Hypothetical Protein compare
mRNA_8419 16787 -1.9 -0.2 K14310 NUP205, NUP192 nuclear pore complex protein Nup205 compare
mRNA_6880 15248 -1.9 -2.7 K00641 metX homoserine O-acetyltransferase compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in ypd buoyancy experiments

For ypd buoyancy unknown across organisms