Experiment setABuoy_YPD_Bot for Rhodosporidium toruloides IFO0880

Compare to:

40 hrs Low Buoyancy

200 most detrimental genes:

  gene name fitness t score description  
mRNA_5620 13988 +1.9 2.5 HMMPfam-GRF zinc finger-PF06839 compare
mRNA_858 9226 +1.9 1.4 K10599 PRPF19, PRP19 pre-mRNA-processing factor 19 compare
mRNA_1437 9805 +1.8 1.6 K01526 E3.6.1.42 guanosine-diphosphatase compare
mRNA_6411 14779 +1.8 1.7 BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M... compare
mRNA_1134 9502 +1.7 4.2 K10685 UBLE1B, SAE2, UBA2 ubiquitin-like 1-activating enzyme E1 B compare
mRNA_5369 13737 +1.6 2.0 K03627 MBF1 putative transcription factor compare
mRNA_4961 13329 +1.6 0.8 Hypothetical Protein compare
mRNA_1945 10313 +1.6 9.8 Hypothetical Protein compare
mRNA_2131 10499 +1.6 8.2 K09580 PDIA1, P4HB protein disulfide-isomerase A1 compare
mRNA_8181 16549 +1.5 2.4 KOG1752 Glutaredoxin and related proteins compare
mRNA_3232 11600 +1.5 1.6 ProSiteProfiles-BRCT domain profile.-PS50172 compare
mRNA_2 8370 +1.5 2.0 PRINTS-Proline rich extensin signature-PR01217 compare
mRNA_3753 12121 +1.5 13.4 K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase compare
mRNA_7441 15809 +1.5 1.3 K08884 K08884 serine/threonine protein kinase, bacterial compare
mRNA_1934 10302 +1.5 13.0 HMMPfam-Cryptococcal mannosyltransferase 1-PF11735 compare
mRNA_7448 15816 +1.5 0.7 BLAST putative protein of unknown function [Pseudozyma ... compare
mRNA_6513 14881 +1.5 12.4 HMMPfam-Glycosyl transferase family 90-PF05686,SMART-Putative lipopolysaccharide-modifying enzyme.-SM00672 compare
mRNA_1000 9368 +1.4 7.3 BLAST glycosyltransferase 2 [Moniliophthora roreri MCA ... compare
mRNA_7419 15787 +1.4 1.0 Hypothetical Protein compare
mRNA_4670 13038 +1.4 2.0 Hypothetical Protein compare
mRNA_6553 14921 +1.4 8.5 SUPERFAMILY--SSF52266 compare
mRNA_7833 16201 +1.4 9.4 HMMPfam-Cryptococcal mannosyltransferase 1-PF11735 compare
mRNA_374 8742 +1.3 1.8 Hypothetical Protein compare
mRNA_2233 10601 +1.3 0.8 Hypothetical Protein compare
mRNA_2281 10649 +1.3 2.1 K12190 VPS36, EAP45 ESCRT-II complex subunit VPS36 compare
mRNA_8230 16598 +1.3 7.9 K09668 LARGE glycosyltransferase-like protein LARGE compare
mRNA_2230 10598 +1.3 2.1 HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112 compare
mRNA_5720 14088 +1.2 6.8 K04392 RAC1 Ras-related C3 botulinum toxin substrate 1 compare
mRNA_8133 16501 +1.2 2.1 HMMPfam-Senescence-associated protein-PF06911 compare
mRNA_7480 15848 +1.2 1.4 K01868 TARS, thrS threonyl-tRNA synthetase compare
mRNA_3015 11383 +1.2 1.2 KOG3252 Uncharacterized conserved protein compare
mRNA_1946 10314 +1.2 5.8 KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif compare
mRNA_7571 15939 +1.1 1.9 K11450 KDM1A, AOF2, LSD1 lysine-specific histone demethylase 1A compare
mRNA_6416 14784 +1.1 1.6 Hypothetical Protein compare
mRNA_7103 15471 +1.1 1.3 Hypothetical Protein compare
mRNA_5745 14113 +1.1 3.2 K11665 INO80, INOC1 DNA helicase INO80 compare
mRNA_5126 13494 +1.1 2.8 Hypothetical Protein compare
mRNA_2111 10479 +1.1 1.1 K10575 UBE2G1, UBC7 ubiquitin-conjugating enzyme E2 G1 compare
mRNA_5914 14282 +1.1 2.3 HMMPfam-Nuclear protein Es2-PF09751 compare
mRNA_7434 15802 +1.1 0.6 HMMPfam-Outer membrane protein TOM13-PF08219 compare
mRNA_6568 14936 +1.1 1.7 BLAST Protein IWS1 homolog A [Rhizoctonia solani] compare
mRNA_5170 13538 +1.1 1.0 Hypothetical Protein compare
mRNA_3729 12097 +1.1 5.0 K15280 SLC35C2 solute carrier family 35, member C2 compare
mRNA_460 8828 +1.0 2.5 K15177 LEO1 RNA polymerase-associated protein LEO1 compare
mRNA_1630 9998 +1.0 3.5 SUPERFAMILY--SSF81383 compare
mRNA_6942 15310 +1.0 3.3 K15029 EIF3L translation initiation factor 3 subunit L compare
mRNA_2005 10373 +1.0 3.1 K08286 E2.7.11.- protein-serine/threonine kinase compare
mRNA_6305 14673 +1.0 1.5 HMMPfam-FAM72 protein-PF14976,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028 compare
mRNA_427 8795 +1.0 1.3 Hypothetical Protein compare
mRNA_7572 15940 +1.0 1.2 Hypothetical Protein compare
mRNA_4878 13246 +1.0 9.9 K04348 PPP3C, CNA serine/threonine-protein phosphatase 2B catalytic subunit compare
mRNA_4801 13169 +1.0 2.2 HMMPfam-Uncharacterized alpha/beta hydrolase domain (DUF2235)-PF09994 compare
mRNA_4387 12755 +1.0 1.7 HMMPfam-Ctf8-PF09696 compare
mRNA_1096 9464 +1.0 1.1 KOG1611 Predicted short chain-type dehydrogenase compare
mRNA_2879 11247 +1.0 2.0 HMMPfam-Protein of unknown function (DUF3237)-PF11578 compare
mRNA_3736 12104 +1.0 2.0 K00573 E2.1.1.77, pcm protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
mRNA_2189 10557 +1.0 3.2 K11236 CDC24 cell division control protein 24 compare
mRNA_6772 15140 +1.0 1.0 KOG0202 Ca2+ transporting ATPase compare
mRNA_6268 14636 +1.0 1.5 HMMPfam-Survival motor neuron protein (SMN)-PF06003 compare
mRNA_3894 12262 +1.0 3.3 SUPERFAMILY--SSF54695 compare
mRNA_3770 12138 +1.0 3.2 K12606 RCD1, CNOT9, CAF40 CCR4-NOT transcription complex subunit 9 compare
mRNA_4270 12638 +1.0 1.7 Hypothetical Protein compare
mRNA_3516 11884 +1.0 0.8 K01466 allB allantoinase compare
mRNA_5734 14102 +1.0 1.3 K01183 E3.2.1.14 chitinase compare
mRNA_3777 12145 +1.0 4.0 K20346 TMED4_9_11 p24 family protein alpha compare
mRNA_2527 10895 +1.0 2.6 BLAST protein DGCR14-like [Mucor ambiguus] compare
mRNA_6463 14831 +1.0 1.5 K10427 DCTN5 dynactin 5 compare
mRNA_7063 15431 +1.0 2.0 Hypothetical Protein compare
mRNA_4504 12872 +1.0 1.5 Hypothetical Protein compare
mRNA_5182 13550 +0.9 1.6 Hypothetical Protein compare
mRNA_2822 11190 +0.9 0.4 SUPERFAMILY--SSF52047 compare
mRNA_5878 14246 +0.9 1.6 KOG4210 Nuclear localization sequence binding protein compare
mRNA_1518 9886 +0.9 0.5 K03521 fixA, etfB electron transfer flavoprotein beta subunit compare
mRNA_8135 16503 +0.9 1.8 K00804 GGPS1 geranylgeranyl diphosphate synthase, type III compare
mRNA_2364 10732 +0.9 2.5 K20471 COPD, ARCN1, RET2 coatomer subunit delta compare
mRNA_4764 13132 +0.9 1.4 K12842 SR140 U2-associated protein SR140 compare
mRNA_1844 10212 +0.9 2.9 K16066 ydfG 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase compare
mRNA_1969 10337 +0.9 2.1 K14961 RBBP5, SWD1, CPS50 COMPASS component SWD1 compare
mRNA_1099 9467 +0.9 3.2 K08515 VAMP7 vesicle-associated membrane protein 7 compare
mRNA_7197 15565 +0.9 0.9 KOG0490 Transcription factor, contains HOX domain compare
mRNA_8357 16725 +0.9 3.0 K01739 metB cystathionine gamma-synthase compare
mRNA_3307 11675 +0.9 9.1 K06268 PPP3R, CNB serine/threonine-protein phosphatase 2B regulatory subunit compare
mRNA_235 8603 +0.9 2.3 KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases compare
mRNA_7126 15494 +0.9 2.8 K15122 SLC41A solute carrier family 41 compare
mRNA_3931 12299 +0.9 5.6 BLAST protein [Lichtheimia corymbifera JMRC-FSU-9682] compare
mRNA_3244 11612 +0.8 1.3 Hypothetical Protein compare
mRNA_4662 13030 +0.8 1.9 K20352 TMED10, ERV25 p24 family protein delta-1 compare
mRNA_6664 15032 +0.8 1.1 K03165 TOP3 DNA topoisomerase III compare
mRNA_6272 14640 +0.8 3.0 KOG4679 Uncharacterized protein PSP1 (suppressor of DNA polymerase alpha mutations in yeast) compare
mRNA_8363 16731 +0.8 3.4 KOG1693 emp24/gp25L/p24 family of membrane trafficking proteins compare
mRNA_4064 12432 +0.8 3.1 HMMPfam-Rdx family-PF10262,SUPERFAMILY--SSF52833 compare
mRNA_7431 15799 +0.8 2.0 K12396 AP3D AP-3 complex subunit delta compare
mRNA_3649 12017 +0.8 3.0 HMMPfam-Protein of unknown function, DUF604-PF04646 compare
mRNA_988 9356 +0.8 1.3 BLAST glycerol-3-phosphate O-acyltransferase [Sanghuangporu... compare
mRNA_7071 15439 +0.8 2.9 BLAST histone H3 h3.1 [Schizosaccharomyces japonicus yF... compare
mRNA_3891 12259 +0.8 1.9 K07889 RAB5C Ras-related protein Rab-5C compare
mRNA_6876 15244 +0.8 2.8 Hypothetical Protein compare
mRNA_7229 15597 +0.8 1.4 Hypothetical Protein compare
mRNA_2407 10775 +0.8 1.3 K10880 XRCC3 DNA-repair protein XRCC3 compare
mRNA_3470 11838 +0.8 2.1 KOG1492 C3H1-type Zn-finger protein compare
mRNA_640 9008 +0.8 2.0 HMMPfam-UV radiation resistance protein and autophagy-related subunit 14-PF10186 compare
mRNA_5496 13864 +0.8 1.4 HMMPfam-HSF-type DNA-binding-PF00447,SUPERFAMILY--SSF46785 compare
mRNA_6125 14493 +0.8 2.8 KOG1477 SPRY domain-containing proteins compare
mRNA_5805 14173 +0.8 1.3 HMMPfam-Ion transport protein-PF00520,SUPERFAMILY--SSF81324 compare
mRNA_7744 16112 +0.8 1.2 Hypothetical Protein compare
mRNA_921 9289 +0.8 2.5 KOG1485 Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) compare
mRNA_8008 16376 +0.8 1.5 BLAST CAMK/CAMKL protein kinase [Microbotryum lychnidis-dio... compare
mRNA_4464 12832 +0.8 1.6 Hypothetical Protein compare
mRNA_1758 10126 +0.8 1.5 KOG2998 Uncharacterized conserved protein compare
mRNA_5509 13877 +0.8 2.2 ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850 compare
mRNA_1095 9463 +0.8 1.3 KOG2741 Dimeric dihydrodiol dehydrogenase compare
mRNA_8010 16378 +0.8 0.8 K15414 C1QBP complement component 1 Q subcomponent-binding protein, mitochondrial compare
mRNA_2670 11038 +0.8 1.2 SUPERFAMILY--SSF52058 compare
mRNA_70 8438 +0.8 3.4 HMMPfam-Membrane-associating domain-PF01284 compare
mRNA_3832 12200 +0.8 0.7 Hypothetical Protein compare
mRNA_4398 12766 +0.8 3.6 HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729 compare
mRNA_2701 11069 +0.8 0.0 HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448 compare
mRNA_1981 10349 +0.8 3.1 HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899 compare
mRNA_7046 15414 +0.8 1.0 K01341 KEX2 kexin compare
mRNA_5233 13601 +0.8 3.7 HMMPfam-Transmembrane amino acid transporter protein-PF01490 compare
mRNA_1761 10129 +0.8 1.3 K07189 PPP1R3 protein phosphatase 1 regulatory subunit 3A/B/C/D/E compare
mRNA_5983 14351 +0.8 1.1 Hypothetical Protein compare
mRNA_699 9067 +0.7 4.1 K20289 COG2 conserved oligomeric Golgi complex subunit 2 compare
mRNA_7891 16259 +0.7 1.4 Hypothetical Protein compare
mRNA_4213 12581 +0.7 0.7 K01673 cynT, can carbonic anhydrase compare
mRNA_5354 13722 +0.7 0.8 KOG0557 Dihydrolipoamide acetyltransferase compare
mRNA_5381 13749 +0.7 1.9 Hypothetical Protein compare
mRNA_4244 12612 +0.7 2.8 Hypothetical Protein compare
mRNA_2251 10619 +0.7 2.4 KOG3313 Molecular chaperone Prefoldin, subunit 3 compare
mRNA_5540 13908 +0.7 5.2 Interpro GDP-fucose protein O-fucosyltransferase compare
mRNA_1511 9879 +0.7 1.3 KOG2136 Transcriptional regulators binding to the GC-rich sequences compare
mRNA_6533 14901 +0.7 0.6 Hypothetical Protein compare
mRNA_1677 10045 +0.7 9.0 K15620 GOLPH3, GPP34 golgi phosphoprotein 3 compare
mRNA_5246 13614 +0.7 2.4 K00411 UQCRFS1, RIP1, petA ubiquinol-cytochrome c reductase iron-sulfur subunit compare
mRNA_8332 16700 +0.7 4.5 K10082 LMAN2, VIP36 lectin, mannose-binding 2 compare
mRNA_3699 12067 +0.7 2.5 KOG0870 DNA polymerase epsilon, subunit D compare
mRNA_6808 15176 +0.7 1.1 K12856 PRPF8, PRP8 pre-mRNA-processing factor 8 compare
mRNA_6967 15335 +0.7 1.7 K19995 SCAMP secretory carrier-associated membrane protein compare
mRNA_4887 13255 +0.7 4.1 K11365 SGF73 SAGA-associated factor 73 compare
mRNA_811 9179 +0.7 2.5 Interpro Glycosyl-transferase for dystroglycan compare
mRNA_2311 10679 +0.7 2.1 K20195 MON1 vacuolar fusion protein MON1 compare
mRNA_3935 12303 +0.7 2.0 HMMPfam-ER protein Pkr1-PF08636 compare
mRNA_4874 13242 +0.7 1.2 KOG2922 Uncharacterized conserved protein compare
mRNA_7107 15475 +0.7 1.9 KOG2950 Uncharacterized protein involved in protein-protein interaction, contains polyproline-binding GYF domain compare
mRNA_3132 11500 +0.7 1.2 Hypothetical Protein compare
mRNA_6269 14637 +0.7 2.7 KOG1336 Monodehydroascorbate/ferredoxin reductase compare
mRNA_393 8761 +0.7 1.9 Hypothetical Protein compare
mRNA_3477 11845 +0.7 3.4 K07088 K07088 uncharacterized protein compare
mRNA_8434 16802 +0.7 2.1 SUPERFAMILY--SSF55729 compare
mRNA_3245 11613 +0.7 3.7 HMMPfam-Fungal protein of unknown function (DUF1752)-PF08550,HMMPfam-Protein of unknown function (DUF3295)-PF11702 compare
mRNA_1533 9901 +0.7 2.0 K04649 HIP2, UBC1 ubiquitin-conjugating enzyme (huntingtin interacting protein 2) compare
mRNA_1558 9926 +0.7 1.9 KOG4155 FOG WD40 repeat compare
mRNA_7543 15911 +0.7 4.4 KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
mRNA_4419 12787 +0.7 3.2 K11121 SIR2 NAD-dependent histone deacetylase SIR2 compare
mRNA_7515 15883 +0.7 8.2 K07827 KRAS, KRAS2 GTPase KRas compare
mRNA_2505 10873 +0.7 1.5 KOG3299 Uncharacterized conserved protein compare
mRNA_256 8624 +0.7 0.9 K11254 H4 histone H4 compare
mRNA_7737 16105 +0.7 1.7 HMMPfam-Antibiotic biosynthesis monooxygenase-PF03992,SUPERFAMILY--SSF54909 compare
mRNA_5174 13542 +0.7 1.7 Hypothetical Protein compare
mRNA_8325 16693 +0.7 0.3 KOG1688 Golgi proteins involved in ER retention (RER) compare
mRNA_6590 14958 +0.7 0.7 K03009 RPB12, POLR2K DNA-directed RNA polymerases I, II, and III subunit RPABC4 compare
mRNA_8242 16610 +0.7 0.9 KOG3319 Predicted membrane protein compare
mRNA_2072 10440 +0.7 1.1 KOG2908 26S proteasome regulatory complex, subunit RPN9/PSMD13 compare
mRNA_5804 14172 +0.7 1.1 Hypothetical Protein compare
mRNA_5548 13916 +0.7 1.1 KOG4006 Anti-proliferation factor BTG1/TOB compare
mRNA_4686 13054 +0.7 1.2 HMMPfam-COMPASS (Complex proteins associated with Set1p) component shg1-PF05205 compare
mRNA_8382 16750 +0.7 2.4 K00799 GST, gst glutathione S-transferase compare
mRNA_5664 14032 +0.7 2.0 K01262 pepP Xaa-Pro aminopeptidase compare
mRNA_1802 10170 +0.7 6.0 K05546 GANAB alpha 1,3-glucosidase compare
mRNA_4109 12477 +0.7 1.1 Hypothetical Protein compare
mRNA_8036 16404 +0.7 1.2 K01942 HLCS biotin--protein ligase compare
mRNA_8174 16542 +0.7 1.3 K00645 fabD [acyl-carrier-protein] S-malonyltransferase compare
mRNA_1538 9906 +0.7 1.4 K20307 TRAPPC10, TRS130 trafficking protein particle complex subunit 10 compare
mRNA_5430 13798 +0.7 2.7 HMMPfam-Putative methyltransferase-PF10294,SUPERFAMILY--SSF53335 compare
mRNA_3692 12060 +0.7 1.2 K04371 MAPK1_3 mitogen-activated protein kinase 1/3 compare
mRNA_4805 13173 +0.7 1.8 ProSiteProfiles-BTB domain profile.-PS50097 compare
mRNA_802 9170 +0.7 1.2 SUPERFAMILY--SSF52047 compare
mRNA_6289 14657 +0.7 2.7 Hypothetical Protein compare
mRNA_6020 14388 +0.7 0.6 SUPERFAMILY--SSF52047 compare
mRNA_1996 10364 +0.7 1.9 KOG0379 Kelch repeat-containing proteins compare
mRNA_5603 13971 +0.7 3.6 K09523 DNAJC3 DnaJ homolog subfamily C member 3 compare
mRNA_5201 13569 +0.7 1.3 K02304 MET8 precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase compare
mRNA_5151 13519 +0.7 3.5 HMMPfam-SUR7/PalI family-PF06687 compare
mRNA_2356 10724 +0.7 2.1 Hypothetical Protein compare
mRNA_1008 9376 +0.7 2.2 BLAST expressed protein [Cryptococcus neoformans var. neofo... compare
mRNA_322 8690 +0.6 1.7 Hypothetical Protein compare
mRNA_6649 15017 +0.6 -0.6 K12580 CNOT3, NOT3 CCR4-NOT transcription complex subunit 3 compare
mRNA_8130 16498 +0.6 3.0 BLAST transcription factor [Pseudozyma hubeiensis SY62] compare
mRNA_2003 10371 +0.6 5.1 KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif compare
mRNA_3285 11653 +0.6 2.9 KOG2069 Golgi transport complex subunit compare
mRNA_6958 15326 +0.6 3.6 K09238 ACE2 metallothionein expression activator compare
mRNA_6786 15154 +0.6 0.5 K14784 CMS1 protein CMS1 compare
mRNA_7677 16045 +0.6 3.7 Hypothetical Protein compare
mRNA_3625 11993 +0.6 3.6 K01176 AMY, amyA, malS alpha-amylase compare
mRNA_6663 15031 +0.6 2.9 Hypothetical Protein compare
mRNA_5366 13734 +0.6 1.8 KOG1752 Glutaredoxin and related proteins compare
mRNA_5676 14044 +0.6 2.7 BLAST putative protein 27 [Rhizopogon vesiculosus] compare
mRNA_1582 9950 +0.6 0.8 K01381 PEP4 saccharopepsin compare
mRNA_1534 9902 +0.6 3.3 K12493 ARFGAP2_3 ADP-ribosylation factor GTPase-activating protein 2/3 compare
mRNA_3187 11555 +0.6 1.4 BLAST Protein disulfide-isomerase erp38 [Hypsizygus marmoreus] compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in ypd buoyancy experiments

For ypd buoyancy unknown across organisms