Experiment setABuoy_YPD_Bot for Rhodosporidium toruloides IFO0880

Compare to:

40 hrs Low Buoyancy

200 most important genes:

  gene name fitness t score description  
mRNA_4086 12454 -5.5 -3.3 Hypothetical Protein compare
mRNA_2707 11075 -4.9 -14.5 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_7374 15742 -4.1 -2.4 Hypothetical Protein compare
mRNA_2430 10798 -3.9 -13.3 K09467 MIG zinc-finger protein CreA/MIG compare
mRNA_1228 9596 -3.9 -13.6 K00693 GYS glycogen synthase compare
mRNA_1657 10025 -3.5 -28.5 K08286 E2.7.11.- protein-serine/threonine kinase compare
mRNA_4226 12594 -3.2 -19.6 K00700 GBE1, glgB 1,4-alpha-glucan branching enzyme compare
mRNA_1896 10264 -3.1 -8.3 K00844 HK hexokinase compare
mRNA_3254 11622 -2.8 -2.1 K12161 URM1 ubiquitin related modifier 1 compare
mRNA_2396 10764 -2.8 -16.9 K14169 CTU2, NCS2 cytoplasmic tRNA 2-thiolation protein 2 compare
mRNA_2973 11341 -2.8 -15.3 K11996 MOCS3, UBA4 adenylyltransferase and sulfurtransferase compare
mRNA_1483 9851 -2.7 -1.6 BLAST Protein priB [Grifola frondosa] compare
mRNA_6278 14646 -2.7 -3.6 K17080 PHB1 prohibitin 1 compare
mRNA_2891 11259 -2.6 -3.3 Hypothetical Protein compare
mRNA_4449 12817 -2.6 -14.1 K14168 CTU1, NCS6 cytoplasmic tRNA 2-thiolation protein 1 compare
mRNA_6369 14737 -2.5 -4.2 Hypothetical Protein compare
mRNA_1906 10274 -2.4 -6.0 KOG0627 Heat shock transcription factor compare
mRNA_6550 14918 -2.4 -7.9 K11374 ELP2 elongator complex protein 2 compare
mRNA_7541 15909 -2.4 -20.2 K04564 SOD2 superoxide dismutase, Fe-Mn family compare
mRNA_34 8402 -2.2 -2.2 BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ... compare
mRNA_2173 10541 -2.0 -2.3 K03950 NDUFA6 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6 compare
mRNA_5682 14050 -1.9 -1.3 K03349 APC2 anaphase-promoting complex subunit 2 compare
mRNA_6989 15357 -1.9 -5.2 K11836 USP5_13, UBP14 ubiquitin carboxyl-terminal hydrolase 5/13 compare
mRNA_6438 14806 -1.9 -4.1 K15456 KTI12 protein KTI12 compare
mRNA_1660 10028 -1.9 -3.3 Hypothetical Protein compare
mRNA_313 8681 -1.8 -1.6 Hypothetical Protein compare
mRNA_5171 13539 -1.8 -9.7 KOG2262 Sexual differentiation process protein ISP4 compare
mRNA_4659 13027 -1.8 -2.5 KOG1134 Uncharacterized conserved protein compare
mRNA_7796 16164 -1.8 -3.1 K11322 EPC enhancer of polycomb-like protein compare
mRNA_406 8774 -1.8 -2.0 HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735 compare
mRNA_7568 15936 -1.7 -1.1 K18753 ZFP36L butyrate response factor 1 compare
mRNA_6975 15343 -1.7 -11.3 Hypothetical Protein compare
mRNA_1686 10054 -1.7 -1.5 BLAST putative protein [Melanopsichium pennsylvanicum 4] compare
mRNA_7922 16290 -1.7 -3.6 K17065 DNM1L dynamin 1-like protein compare
mRNA_913 9281 -1.7 -2.0 Hypothetical Protein compare
mRNA_6821 15189 -1.6 -7.7 K07739 ELP3, KAT9 elongator complex protein 3 compare
mRNA_8371 16739 -1.6 -1.1 HMMPfam-GPR1/FUN34/yaaH family-PF01184 compare
mRNA_2521 10889 -1.6 -1.3 BLAST beta-glucosidase 1 precursor [Aspergillus rambellii] compare
mRNA_5863 14231 -1.5 -2.8 K09281 K09281 copper-fist transcription factor compare
mRNA_3383 11751 -1.5 -0.6 HMMPfam-BSD domain-PF03909,ProSiteProfiles-BSD domain profile.-PS50858,SMART-domain in transcription factors and synapse-associated proteins-SM00751,SUPERFAMILY--SSF140383 compare
mRNA_25 8393 -1.5 -2.6 Hypothetical Protein compare
mRNA_5902 14270 -1.5 -3.4 K08336 ATG12 ubiquitin-like protein ATG12 compare
mRNA_5912 14280 -1.4 -1.7 K11375 ELP4 elongator complex protein 4 compare
mRNA_815 9183 -1.4 -1.3 K04555 UBE2G2, UBC7 ubiquitin-conjugating enzyme E2 G2 compare
mRNA_5634 14002 -1.3 -8.3 K00750 GYG1, GYG2 glycogenin compare
mRNA_3955 12323 -1.3 -0.9 K02355 fusA, GFM, EFG elongation factor G compare
mRNA_5891 14259 -1.3 -2.0 K11788 ADE5 phosphoribosylamine--glycine ligase / phosphoribosylformylglycinamidine cyclo-ligase compare
mRNA_3419 11787 -1.3 -4.8 K01120 cpdP 3',5'-cyclic-nucleotide phosphodiesterase compare
mRNA_6348 14716 -1.3 -4.6 K11373 ELP1, IKI3, IKBKAP elongator complex protein 1 compare
mRNA_7869 16237 -1.3 -2.6 KOG4366 Predicted thioesterase compare
mRNA_4595 12963 -1.3 -1.2 KOG2186 Cell growth-regulating nucleolar protein compare
mRNA_4175 12543 -1.3 -7.9 K03939 NDUFS6 NADH dehydrogenase (ubiquinone) Fe-S protein 6 compare
mRNA_3414 11782 -1.2 -1.6 Hypothetical Protein compare
mRNA_7219 15587 -1.2 -1.0 K15053 CHMP7 charged multivesicular body protein 7 compare
mRNA_4885 13253 -1.2 -2.4 K03105 SRP19 signal recognition particle subunit SRP19 compare
mRNA_3988 12356 -1.2 -1.3 Hypothetical Protein compare
mRNA_2905 11273 -1.2 -3.7 Hypothetical Protein compare
mRNA_7528 15896 -1.2 -0.9 Hypothetical Protein compare
mRNA_4138 12506 -1.2 -1.8 HMMPfam-Cytochrome c oxidase subunit VIIa-PF02238 compare
mRNA_4222 12590 -1.2 -5.3 K17969 FIS1, TTC11, MDV2 mitochondrial fission 1 protein compare
mRNA_963 9331 -1.2 -3.2 K15109 SLC25A20_29, CACT, CACL, CRC1 solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29 compare
mRNA_5533 13901 -1.2 -1.9 Hypothetical Protein compare
mRNA_2631 10999 -1.2 -5.8 K14803 PTC2_3 protein phosphatase PTC2/3 compare
mRNA_7637 16005 -1.1 -0.6 K12197 CHMP1, VPS46, DID2 charged multivesicular body protein 1 compare
mRNA_4144 12512 -1.1 -5.2 K01669 phrB deoxyribodipyrimidine photo-lyase compare
mRNA_2807 11175 -1.1 -6.9 K11485 MTF2, PCL2 polycomb-like protein 2 compare
mRNA_4660 13028 -1.1 -0.5 Interpro Transcription-silencing protein, cryptic loci regulator Clr2 compare
mRNA_915 9283 -1.1 -1.2 K01950 E6.3.5.1, NADSYN1, QNS1, nadE NAD+ synthase (glutamine-hydrolysing) compare
mRNA_4092 12460 -1.1 -1.4 KOG0941 E3 ubiquitin protein ligase compare
mRNA_1543 9911 -1.1 -2.2 Hypothetical Protein compare
mRNA_2551 10919 -1.1 -3.1 K00799 GST, gst glutathione S-transferase compare
mRNA_3641 12009 -1.1 -1.1 K17615 PPG1 serine/threonine-protein phosphatase PPG1 compare
mRNA_2965 11333 -1.1 -4.3 KOG1721 FOG Zn-finger compare
mRNA_3033 11401 -1.1 -7.8 BLAST related to transcription factor medusa [Melanopsichiu... compare
mRNA_2352 10720 -1.1 -1.7 K02903 RP-L28e, RPL28 large subunit ribosomal protein L28e compare
mRNA_4237 12605 -1.1 -1.2 K15100 SLC25A1, CTP solute carrier family 25 (mitochondrial citrate transporter), member 1 compare
mRNA_3484 11852 -1.1 -2.6 Hypothetical Protein compare
mRNA_275 8643 -1.1 -1.5 BLAST nitrogen assimilation transcription factor [Rhodo... compare
mRNA_547 8915 -1.1 -2.2 KOG2385 Uncharacterized conserved protein compare
mRNA_7330 15698 -1.0 -2.4 KOG0409 Predicted dehydrogenase compare
mRNA_4022 12390 -1.0 -2.9 KOG2661 Peptidase family M48 compare
mRNA_8081 16449 -1.0 -1.5 K00905 BCKDK [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase compare
mRNA_5704 14072 -1.0 -5.7 KOG2483 Upstream transcription factor 2/L-myc-2 protein compare
mRNA_2211 10579 -1.0 -1.4 K09486 HYOU1 hypoxia up-regulated 1 compare
mRNA_7195 15563 -1.0 -9.1 KOG0519 Sensory transduction histidine kinase compare
mRNA_8247 16615 -1.0 -2.6 K01426 E3.5.1.4, amiE amidase compare
mRNA_4136 12504 -1.0 -4.5 K19838 SST2 GTPase-activating protein SST2 compare
mRNA_5101 13469 -1.0 -1.4 K12669 OST3, OST6 oligosaccharyltransferase complex subunit gamma compare
mRNA_2820 11188 -1.0 -0.7 HMMPfam-2-oxoacid dehydrogenases acyltransferase (catalytic domain)-PF00198,HMMPfam-Biotin-requiring enzyme-PF00364,HMMPfam-e3 binding domain-PF02817,SUPERFAMILY--SSF47005,SUPERFAMILY--SSF51230,SUPERFAMILY--SSF52777 compare
mRNA_6950 15318 -1.0 -5.2 KOG4505 Na+/H+ antiporter compare
mRNA_1435 9803 -1.0 -0.7 Hypothetical Protein compare
mRNA_3924 12292 -1.0 -0.9 KOG1993 Nuclear transport receptor KAP120 (importin beta superfamily) compare
mRNA_3216 11584 -1.0 -3.1 K12881 THOC4, ALY THO complex subunit 4 compare
mRNA_4707 13075 -1.0 -1.9 KOG4431 Uncharacterized protein, induced by hypoxia compare
mRNA_6297 14665 -1.0 -4.7 K17970 MDV1, FIS2 mitochondrial division protein 1 compare
mRNA_6443 14811 -1.0 -0.5 K10427 DCTN5 dynactin 5 compare
mRNA_2511 10879 -1.0 -0.5 Hypothetical Protein compare
mRNA_7631 15999 -1.0 -2.4 KOG0226 RNA-binding proteins compare
mRNA_1701 10069 -1.0 -2.0 K03522 fixB, etfA electron transfer flavoprotein alpha subunit compare
mRNA_4220 12588 -1.0 -6.0 K19932 NCS1 neuronal calcium sensor 1 compare
mRNA_514 8882 -1.0 -2.1 KOG0417 Ubiquitin-protein ligase compare
mRNA_2587 10955 -1.0 -1.4 K04368 MAP2K1, MEK1 mitogen-activated protein kinase kinase 1 compare
mRNA_2365 10733 -1.0 -3.6 HMMPfam-C2 domain-PF00168,HMMPfam-Munc13 (mammalian uncoordinated) homology domain-PF10540,ProSiteProfiles-Munc13-homology domain 1 (MHD1) profile.-PS51258,ProSiteProfiles-Munc13-homology domain 2 (MHD2) profile.-PS51259,SMART-Protein kinase C conserved region 2 (CalB)-SM00239,SUPERFAMILY--SSF49562 compare
mRNA_5222 13590 -1.0 -1.8 Hypothetical Protein compare
mRNA_5216 13584 -1.0 -1.0 K04648 DCTN1 dynactin 1 compare
mRNA_6368 14736 -1.0 -1.3 KOG2049 Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) compare
mRNA_4009 12377 -1.0 -2.3 K10639 CCNB1IP1, HEI10 E3 ubiquitin-protein ligase CCNP1IP1 compare
mRNA_3786 12154 -1.0 -3.5 K00006 GPD1 glycerol-3-phosphate dehydrogenase (NAD+) compare
mRNA_6154 14522 -1.0 -11.9 K16667 PTPRG receptor-type tyrosine-protein phosphatase gamma compare
mRNA_4005 12373 -1.0 -1.6 HMMPfam-bZIP transcription factor-PF00170,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959 compare
mRNA_1596 9964 -0.9 -0.4 K14557 UTP6 U3 small nucleolar RNA-associated protein 6 compare
mRNA_1503 9871 -0.9 -3.7 Hypothetical Protein compare
mRNA_772 9140 -0.9 -2.0 Hypothetical Protein compare
mRNA_1591 9959 -0.9 -4.3 K01835 pgm phosphoglucomutase compare
mRNA_5077 13445 -0.9 -2.2 KOG1663 O-methyltransferase compare
mRNA_1867 10235 -0.9 -2.8 HMMPfam-von Willebrand factor type A domain-PF00092,ProSiteProfiles-VWFA domain profile.-PS50234,SMART-von Willebrand factor (vWF) type A domain-SM00327,SUPERFAMILY--SSF53300 compare
mRNA_1326 9694 -0.9 -3.5 KOG1239 Inner membrane protein translocase involved in respiratory chain assembly compare
mRNA_5552 13920 -0.9 -0.8 K03360 GRR1 F-box and leucine-rich repeat protein GRR1 compare
mRNA_8173 16541 -0.9 -0.7 HMMPfam-Glutathione-dependent formaldehyde-activating enzyme-PF04828,SUPERFAMILY--SSF51316 compare
mRNA_952 9320 -0.9 -1.7 Hypothetical Protein compare
mRNA_1188 9556 -0.9 -1.4 Hypothetical Protein compare
mRNA_3639 12007 -0.9 -1.2 K11204 GCLC glutamate--cysteine ligase catalytic subunit compare
mRNA_1864 10232 -0.9 -1.6 SUPERFAMILY--SSF53300 compare
mRNA_7500 15868 -0.9 -1.7 KOG2062 26S proteasome regulatory complex, subunit RPN2/PSMD1 compare
mRNA_4 8372 -0.9 -1.7 K00772 mtaP, MTAP 5'-methylthioadenosine phosphorylase compare
mRNA_4261 12629 -0.9 -1.9 HMMPfam-NUDIX domain-PF00293,ProSitePatterns-Nudix box signature.-PS00893,ProSiteProfiles-Nudix hydrolase domain profile.-PS51462,SUPERFAMILY--SSF55811 compare
mRNA_7783 16151 -0.9 -3.5 HMMPfam-Mitochondrial carrier protein-PF00153,SUPERFAMILY--SSF103506 compare
mRNA_6712 15080 -0.9 -2.3 Hypothetical Protein compare
mRNA_628 8996 -0.9 -3.6 K17894 GATA2 GATA-binding protein 2 compare
mRNA_3815 12183 -0.9 -1.4 K06631 PLK1 polo-like kinase 1 compare
mRNA_4569 12937 -0.9 -0.8 HMMPfam-Integral peroxisomal membrane peroxin-PF06398 compare
mRNA_3773 12141 -0.9 -3.7 BLAST transmembrane protein, putative [Rhizoctonia solani A... compare
mRNA_4590 12958 -0.9 -2.9 Hypothetical Protein compare
mRNA_928 9296 -0.9 -6.3 Hypothetical Protein compare
mRNA_7178 15546 -0.9 -1.3 KOG0417 Ubiquitin-protein ligase compare
mRNA_7484 15852 -0.8 -4.9 K09565 PPIF peptidyl-prolyl isomerase F (cyclophilin D) compare
mRNA_8199 16567 -0.8 -1.7 Hypothetical Protein compare
mRNA_3834 12202 -0.8 -2.4 Hypothetical Protein compare
mRNA_2647 11015 -0.8 -1.8 Hypothetical Protein compare
mRNA_4289 12657 -0.8 -2.7 K15445 TRMT10A, TRM10, RG9MTD2 tRNA (guanine9-N1)-methyltransferase compare
mRNA_6130 14498 -0.8 -2.6 K11786 STH1_SNF2 ATP-dependent helicase STH1/SNF2 compare
mRNA_4548 12916 -0.8 -3.2 K03392 ACMSD aminocarboxymuconate-semialdehyde decarboxylase compare
mRNA_8316 16684 -0.8 -0.9 KOG2923 Uncharacterized conserved protein compare
mRNA_6152 14520 -0.8 -0.3 HMMPfam-Slx4 endonuclease-PF09494 compare
mRNA_3511 11879 -0.8 -0.7 K10875 RAD54L, RAD54 DNA repair and recombination protein RAD54 and RAD54-like protein compare
mRNA_1022 9390 -0.8 -3.1 KOG1550 Extracellular protein SEL-1 and related proteins compare
mRNA_2540 10908 -0.8 -4.1 SUPERFAMILY--SSF52058 compare
mRNA_7822 16190 -0.8 -1.5 Hypothetical Protein compare
mRNA_1032 9400 -0.8 -1.8 Hypothetical Protein compare
mRNA_5608 13976 -0.8 -2.6 K03018 RPC1, POLR3A DNA-directed RNA polymerase III subunit RPC1 compare
mRNA_3559 11927 -0.8 -2.0 K18622 ADD adducin compare
mRNA_8435 16803 -0.8 -2.5 Hypothetical Protein compare
mRNA_1026 9394 -0.8 -2.2 HMMPfam-Protein of unknown function (DUF3317)-PF11779 compare
mRNA_7858 16226 -0.8 -1.3 K11673 ACTR8, ARP8, INO80N actin-related protein 8 compare
mRNA_224 8592 -0.8 -1.1 K07300 chaA, CAX Ca2+-H+ antiporter compare
mRNA_2560 10928 -0.8 -3.6 Hypothetical Protein compare
mRNA_3631 11999 -0.8 -0.7 Hypothetical Protein compare
mRNA_8177 16545 -0.8 -1.4 Hypothetical Protein compare
mRNA_4054 12422 -0.8 -1.7 KOG2973 Uncharacterized conserved protein compare
mRNA_818 9186 -0.8 -2.3 HMMPfam-PQ loop repeat-PF04193 compare
mRNA_1250 9618 -0.8 -1.2 Hypothetical Protein compare
mRNA_1993 10361 -0.8 -1.1 Hypothetical Protein compare
mRNA_4773 13141 -0.8 -2.6 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_4592 12960 -0.8 -0.6 K11655 BAZ1A, ACF1 bromodomain adjacent to zinc finger domain protein 1A compare
mRNA_7433 15801 -0.8 -0.6 K10356 MYO1 myosin I compare
mRNA_8403 16771 -0.8 -4.0 K08829 MAK male germ cell-associated kinase compare
mRNA_3188 11556 -0.8 -3.1 Hypothetical Protein compare
mRNA_7764 16132 -0.7 -1.5 Hypothetical Protein compare
mRNA_2462 10830 -0.7 -1.1 SUPERFAMILY--SSF52047 compare
mRNA_3854 12222 -0.7 -2.5 Hypothetical Protein compare
mRNA_5644 14012 -0.7 -2.9 Hypothetical Protein compare
mRNA_3051 11419 -0.7 -1.2 Hypothetical Protein compare
mRNA_7116 15484 -0.7 -6.2 K04393 CDC42 cell division control protein 42 compare
mRNA_1554 9922 -0.7 -3.0 KOG1611 Predicted short chain-type dehydrogenase compare
mRNA_3287 11655 -0.7 -1.5 Hypothetical Protein compare
mRNA_6315 14683 -0.7 -2.6 K10609 CUL4 cullin 4 compare
mRNA_4925 13293 -0.7 -2.5 ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045 compare
mRNA_5082 13450 -0.7 -1.9 K10696 BRE1 E3 ubiquitin-protein ligase BRE1 compare
mRNA_5442 13810 -0.7 -1.0 HMMPfam-R3H domain-PF01424,HMMPfam-SUZ domain-PF12752,ProSiteProfiles-R3H domain profile.-PS51061,ProSiteProfiles-SUZ domain profile.-PS51673,SUPERFAMILY--SSF82708 compare
mRNA_4641 13009 -0.7 -1.7 KOG1161 Protein involved in vacuolar polyphosphate accumulation, contains SPX domain compare
mRNA_1927 10295 -0.7 -5.5 K19691 NIK1, TCSC osomolarity two-component system, sensor histidine kinase NIK1 compare
mRNA_4910 13278 -0.7 -0.9 K14555 UTP13, TBL3 U3 small nucleolar RNA-associated protein 13 compare
mRNA_5251 13619 -0.7 -0.7 K12867 SYF1, XAB2 pre-mRNA-splicing factor SYF1 compare
mRNA_1480 9848 -0.7 -0.8 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_600 8968 -0.7 -3.5 K17785 IMMT, FCJ1, MNOS2 mitofilin compare
mRNA_7674 16042 -0.7 -1.3 SUPERFAMILY--SSF48371 compare
mRNA_5557 13925 -0.7 -4.4 K09008 NDUFAF3 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 compare
mRNA_4188 12556 -0.7 -2.7 KOG4372 Predicted alpha/beta hydrolase compare
mRNA_6610 14978 -0.7 -1.1 BLAST related to MSL5-branch point bridging protein [Sporis... compare
mRNA_1202 9570 -0.7 -1.6 K11253 H3 histone H3 compare
mRNA_5794 14162 -0.7 -3.4 K01637 E4.1.3.1, aceA isocitrate lyase compare
mRNA_8139 16507 -0.7 -2.6 K01139 spoT, HDDC3 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
mRNA_8246 16614 -0.7 -1.3 Hypothetical Protein compare
mRNA_7516 15884 -0.7 -0.5 HMMPfam-Protoglobin-PF11563 compare
mRNA_3990 12358 -0.7 -2.0 K07561 DPH1, dph2 2-(3-amino-3-carboxypropyl)histidine synthase compare
mRNA_506 8874 -0.7 -3.9 K08793 STK32, YANK serine/threonine kinase 32 compare
mRNA_7678 16046 -0.7 -1.6 K00657 speG diamine N-acetyltransferase compare
mRNA_2949 11317 -0.7 -2.5 K02267 COX6B cytochrome c oxidase subunit 6b compare
mRNA_5966 14334 -0.7 -1.9 KOG1950 Glycosyl transferase, family 8 - glycogenin compare
mRNA_8284 16652 -0.7 -1.5 K07023 K07023 putative hydrolases of HD superfamily compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in ypd buoyancy experiments

For ypd buoyancy unknown across organisms