Experiment setABuoy_YPD_Top for Rhodosporidium toruloides IFO0880

Compare to:

40 hrs High Buoyancy

200 most detrimental genes:

  gene name fitness t score description  
mRNA_858 9226 +3.1 1.9 K10599 PRPF19, PRP19 pre-mRNA-processing factor 19 compare
mRNA_34 8402 +2.3 5.9 BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ... compare
mRNA_8137 16505 +1.9 1.8 K00586 DPH5 diphthine methyl ester synthase compare
mRNA_4592 12960 +1.8 2.7 K11655 BAZ1A, ACF1 bromodomain adjacent to zinc finger domain protein 1A compare
mRNA_7823 16191 +1.8 2.1 K03011 RPB3, POLR2C DNA-directed RNA polymerase II subunit RPB3 compare
mRNA_4961 13329 +1.7 0.8 Hypothetical Protein compare
mRNA_7572 15940 +1.7 1.7 Hypothetical Protein compare
mRNA_3516 11884 +1.6 2.0 K01466 allB allantoinase compare
mRNA_8133 16501 +1.5 2.6 HMMPfam-Senescence-associated protein-PF06911 compare
mRNA_6649 15017 +1.5 0.6 K12580 CNOT3, NOT3 CCR4-NOT transcription complex subunit 3 compare
mRNA_2822 11190 +1.5 0.6 SUPERFAMILY--SSF52047 compare
mRNA_8181 16549 +1.5 2.3 KOG1752 Glutaredoxin and related proteins compare
mRNA_2233 10601 +1.4 1.1 Hypothetical Protein compare
mRNA_4138 12506 +1.4 3.7 HMMPfam-Cytochrome c oxidase subunit VIIa-PF02238 compare
mRNA_7912 16280 +1.4 1.3 K11434 PRMT1 type I protein arginine methyltransferase compare
mRNA_1437 9805 +1.4 1.0 K01526 E3.6.1.42 guanosine-diphosphatase compare
mRNA_8307 16675 +1.3 2.7 Hypothetical Protein compare
mRNA_1618 9986 +1.3 2.1 Hypothetical Protein compare
mRNA_4479 12847 +1.3 0.7 K17290 HTATIP2 oxidoreductase compare
mRNA_6786 15154 +1.3 1.0 K14784 CMS1 protein CMS1 compare
mRNA_6725 15093 +1.3 1.4 K07575 K07575 PUA domain protein compare
mRNA_7434 15802 +1.2 1.1 HMMPfam-Outer membrane protein TOM13-PF08219 compare
mRNA_3832 12200 +1.2 1.4 Hypothetical Protein compare
mRNA_6368 14736 +1.2 2.3 KOG2049 Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) compare
mRNA_8213 16581 +1.2 1.4 KOG1590 Uncharacterized conserved protein compare
mRNA_4041 12409 +1.2 1.6 HMMPfam-Sds3-like-PF08598 compare
mRNA_7441 15809 +1.2 0.9 K08884 K08884 serine/threonine protein kinase, bacterial compare
mRNA_6416 14784 +1.2 1.7 Hypothetical Protein compare
mRNA_4109 12477 +1.2 2.0 Hypothetical Protein compare
mRNA_5509 13877 +1.2 2.6 ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850 compare
mRNA_2670 11038 +1.2 1.8 SUPERFAMILY--SSF52058 compare
mRNA_6533 14901 +1.2 0.4 Hypothetical Protein compare
mRNA_1250 9618 +1.2 2.2 Hypothetical Protein compare
mRNA_6152 14520 +1.2 2.6 HMMPfam-Slx4 endonuclease-PF09494 compare
mRNA_3214 11582 +1.1 1.3 KOG3989 Beta-2-glycoprotein I compare
mRNA_2173 10541 +1.1 5.6 K03950 NDUFA6 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6 compare
mRNA_2111 10479 +1.1 0.8 K10575 UBE2G1, UBC7 ubiquitin-conjugating enzyme E2 G1 compare
mRNA_5805 14173 +1.1 2.4 HMMPfam-Ion transport protein-PF00520,SUPERFAMILY--SSF81324 compare
mRNA_7637 16005 +1.1 0.9 K12197 CHMP1, VPS46, DID2 charged multivesicular body protein 1 compare
mRNA_205 8573 +1.1 2.4 KOG4267 Predicted membrane protein compare
mRNA_6944 15312 +1.1 1.4 HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047 compare
mRNA_4328 12696 +1.0 2.0 HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383 compare
mRNA_1546 9914 +1.0 2.2 K18040 PTPN23 tyrosine-protein phosphatase non-receptor type 23 compare
mRNA_5594 13962 +1.0 2.6 K07943 ARL2 ADP-ribosylation factor-like protein 2 compare
mRNA_2311 10679 +1.0 3.0 K20195 MON1 vacuolar fusion protein MON1 compare
mRNA_5170 13538 +1.0 1.7 Hypothetical Protein compare
mRNA_3796 12164 +1.0 3.2 Hypothetical Protein compare
mRNA_8020 16388 +1.0 2.2 K19841 STE50 protein STE50 compare
mRNA_5620 13988 +1.0 0.9 HMMPfam-GRF zinc finger-PF06839 compare
mRNA_2172 10540 +1.0 4.0 K00968 PCYT1 choline-phosphate cytidylyltransferase compare
mRNA_6905 15273 +1.0 2.8 K14300 NUP133 nuclear pore complex protein Nup133 compare
mRNA_7448 15816 +1.0 0.8 BLAST putative protein of unknown function [Pseudozyma ... compare
mRNA_1421 9789 +1.0 3.0 K06950 K06950 uncharacterized protein compare
mRNA_3520 11888 +1.0 0.8 BLAST mannose-6-phosphate isomerase, class I [Kwoniella... compare
mRNA_6020 14388 +1.0 0.9 SUPERFAMILY--SSF52047 compare
mRNA_3474 11842 +1.0 1.9 HMMPfam-Protein of unknown function (DUF667)-PF05018 compare
mRNA_1464 9832 +0.9 2.4 BLAST conidiation protein Con-6, putative [Aspergillus ... compare
mRNA_7197 15565 +0.9 0.9 KOG0490 Transcription factor, contains HOX domain compare
mRNA_7046 15414 +0.9 1.0 K01341 KEX2 kexin compare
mRNA_963 9331 +0.9 3.5 K15109 SLC25A20_29, CACT, CACL, CRC1 solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29 compare
mRNA_121 8489 +0.9 1.3 BLAST Pc20g03530 [Penicillium rubens Wisconsin 54-1255] compare
mRNA_6488 14856 +0.9 1.6 K01655 LYS21, LYS20 homocitrate synthase compare
mRNA_111 8479 +0.9 2.7 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_2212 10580 +0.9 0.5 K04441 P38 p38 MAP kinase compare
mRNA_6268 14636 +0.9 1.2 HMMPfam-Survival motor neuron protein (SMN)-PF06003 compare
mRNA_6463 14831 +0.9 1.4 K10427 DCTN5 dynactin 5 compare
mRNA_6369 14737 +0.9 2.5 Hypothetical Protein compare
mRNA_1901 10269 +0.9 2.2 HMMPfam-Spo7-like protein-PF03907 compare
mRNA_7651 16019 +0.9 3.0 K03671 trxA thioredoxin 1 compare
mRNA_8193 16561 +0.9 1.3 Hypothetical Protein compare
mRNA_1456 9824 +0.9 1.4 Hypothetical Protein compare
mRNA_1326 9694 +0.9 3.9 KOG1239 Inner membrane protein translocase involved in respiratory chain assembly compare
mRNA_1590 9958 +0.9 3.6 KOG0586 Serine/threonine protein kinase compare
mRNA_8174 16542 +0.9 1.6 K00645 fabD [acyl-carrier-protein] S-malonyltransferase compare
mRNA_4672 13040 +0.9 2.4 K11979 UBR7 E3 ubiquitin-protein ligase UBR7 compare
mRNA_8413 16781 +0.9 2.1 KOG4484 Uncharacterized conserved protein compare
mRNA_6782 15150 +0.9 2.4 HMMPfam-Man1-Src1p-C-terminal domain-PF09402,HMMPfam-HeH/LEM domain-PF12949 compare
mRNA_5354 13722 +0.9 0.9 KOG0557 Dihydrolipoamide acetyltransferase compare
mRNA_7855 16223 +0.9 1.3 K15443 TRM82, WDR4 tRNA (guanine-N(7)-)-methyltransferase subunit TRM82 compare
mRNA_8325 16693 +0.9 0.4 KOG1688 Golgi proteins involved in ER retention (RER) compare
mRNA_2061 10429 +0.9 2.3 HMMPfam-Protein of unknown function (DUF1640)-PF07798 compare
mRNA_1299 9667 +0.8 0.4 K00600 glyA, SHMT glycine hydroxymethyltransferase compare
mRNA_7992 16360 +0.8 2.0 HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232 compare
mRNA_5465 13833 +0.8 2.0 Hypothetical Protein compare
mRNA_722 9090 +0.8 2.2 HMMPfam-Thiopurine S-methyltransferase (TPMT)-PF05724,ProSiteProfiles-Thiopurine or thiol or thiocyanate S-methyltransferase (TPMT) family profile.-PS51585,SUPERFAMILY--SSF53335 compare
mRNA_8242 16610 +0.8 1.1 KOG3319 Predicted membrane protein compare
mRNA_7453 15821 +0.8 1.2 K14407 CSTF2, RNA15 cleavage stimulation factor subunit 2 compare
mRNA_322 8690 +0.8 1.7 Hypothetical Protein compare
mRNA_6821 15189 +0.8 4.1 K07739 ELP3, KAT9 elongator complex protein 3 compare
mRNA_5624 13992 +0.8 1.0 KOG1611 Predicted short chain-type dehydrogenase compare
mRNA_4288 12656 +0.8 1.9 Hypothetical Protein compare
mRNA_660 9028 +0.8 3.0 K13289 CTSA, CPY cathepsin A (carboxypeptidase C) compare
mRNA_2541 10909 +0.8 1.0 HMMPfam-Hemerythrin HHE cation binding domain-PF01814 compare
mRNA_1660 10028 +0.8 1.9 Hypothetical Protein compare
mRNA_5660 14028 +0.8 2.9 Hypothetical Protein compare
mRNA_1494 9862 +0.8 2.1 HMMPfam-Haloacid dehalogenase-like hydrolase-PF13419,SUPERFAMILY--SSF56784 compare
mRNA_2960 11328 +0.8 1.6 KOG2617 Citrate synthase compare
mRNA_1424 9792 +0.8 1.4 HMMPfam-NUP50 (Nucleoporin 50 kDa)-PF08911 compare
mRNA_5885 14253 +0.8 1.7 KOG1424 Predicted GTP-binding protein MMR1 compare
mRNA_7648 16016 +0.8 1.1 K01705 LYS4 homoaconitate hydratase compare
mRNA_6775 15143 +0.8 0.3 K14784 CMS1 protein CMS1 compare
mRNA_6847 15215 +0.8 2.6 Hypothetical Protein compare
mRNA_7478 15846 +0.8 2.5 Hypothetical Protein compare
mRNA_6808 15176 +0.8 1.7 K12856 PRPF8, PRP8 pre-mRNA-processing factor 8 compare
mRNA_5182 13550 +0.8 0.9 Hypothetical Protein compare
mRNA_2548 10916 +0.8 2.3 KOG1943 Beta-tubulin folding cofactor D compare
mRNA_6665 15033 +0.8 1.0 K01952 purL, PFAS phosphoribosylformylglycinamidine synthase compare
mRNA_6550 14918 +0.8 3.7 K11374 ELP2 elongator complex protein 2 compare
mRNA_5770 14138 +0.8 1.9 K15171 SUPT4H1, SPT4 transcription elongation factor SPT4 compare
mRNA_6641 15009 +0.8 2.3 K11863 ATXN3, MJD Ataxin-3 compare
mRNA_3699 12067 +0.8 2.7 KOG0870 DNA polymerase epsilon, subunit D compare
mRNA_4043 12411 +0.8 2.3 Hypothetical Protein compare
mRNA_5914 14282 +0.8 1.7 HMMPfam-Nuclear protein Es2-PF09751 compare
mRNA_5328 13696 +0.8 1.8 HMMPfam-ATP adenylyltransferase-PF09830,SUPERFAMILY--SSF54197 compare
mRNA_8116 16484 +0.8 1.3 K00949 thiN, TPK1, THI80 thiamine pyrophosphokinase compare
mRNA_4542 12910 +0.8 2.2 K05302 SETD6 N-lysine methyltransferase SETD6 compare
mRNA_6882 15250 +0.8 1.5 Hypothetical Protein compare
mRNA_4686 13054 +0.8 1.0 HMMPfam-COMPASS (Complex proteins associated with Set1p) component shg1-PF05205 compare
mRNA_6568 14936 +0.7 1.1 BLAST Protein IWS1 homolog A [Rhizoctonia solani] compare
mRNA_4670 13038 +0.7 1.0 Hypothetical Protein compare
mRNA_3232 11600 +0.7 0.7 ProSiteProfiles-BRCT domain profile.-PS50172 compare
mRNA_7733 16101 +0.7 1.4 HMMPfam-DinB superfamily-PF12867 compare
mRNA_6975 15343 +0.7 5.1 Hypothetical Protein compare
mRNA_6893 15261 +0.7 1.6 Hypothetical Protein compare
mRNA_2891 11259 +0.7 1.9 Hypothetical Protein compare
mRNA_5366 13734 +0.7 2.1 KOG1752 Glutaredoxin and related proteins compare
mRNA_1319 9687 +0.7 0.7 KOG0404 Thioredoxin reductase compare
mRNA_2874 11242 +0.7 0.3 K00555 TRMT1, trm1 tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase compare
mRNA_48 8416 +0.7 1.2 HMMPfam-Serine hydrolase (FSH1)-PF03959,SUPERFAMILY--SSF53474 compare
mRNA_3675 12043 +0.7 3.0 K11251 H2A histone H2A compare
mRNA_7450 15818 +0.7 1.1 BLAST proteophosphoglycan protein, putative [Rhizoctonia so... compare
mRNA_3745 12113 +0.7 1.2 BLAST protein of unknown function [Taphrina deformans PYCC ... compare
mRNA_7266 15634 +0.7 1.7 Hypothetical Protein compare
mRNA_597 8965 +0.7 2.4 ProSiteProfiles-APSES-type HTH DNA-binding domain profile.-PS51299,SUPERFAMILY--SSF54616 compare
mRNA_7083 15451 +0.7 0.8 K18803 HPM1 protein-histidine N-methyltransferase compare
mRNA_8189 16557 +0.7 3.2 HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474 compare
mRNA_7225 15593 +0.7 2.4 Hypothetical Protein compare
mRNA_2973 11341 +0.7 5.4 K11996 MOCS3, UBA4 adenylyltransferase and sulfurtransferase compare
mRNA_6967 15335 +0.7 1.7 K19995 SCAMP secretory carrier-associated membrane protein compare
mRNA_4966 13334 +0.7 0.8 Hypothetical Protein compare
mRNA_7554 15922 +0.7 0.4 K07359 CAMKK calcium/calmodulin-dependent protein kinase kinase compare
mRNA_1593 9961 +0.7 2.3 KOG4366 Predicted thioesterase compare
mRNA_4766 13134 +0.7 3.3 BLAST ribonuclease e [Moniliophthora roreri MCA 2997] compare
mRNA_4064 12432 +0.7 2.1 HMMPfam-Rdx family-PF10262,SUPERFAMILY--SSF52833 compare
mRNA_4261 12629 +0.7 2.0 HMMPfam-NUDIX domain-PF00293,ProSitePatterns-Nudix box signature.-PS00893,ProSiteProfiles-Nudix hydrolase domain profile.-PS51462,SUPERFAMILY--SSF55811 compare
mRNA_3891 12259 +0.7 1.5 K07889 RAB5C Ras-related protein Rab-5C compare
mRNA_4792 13160 +0.7 1.9 Hypothetical Protein compare
mRNA_914 9282 +0.7 0.6 K10903 HUS1 HUS1 checkpoint protein compare
mRNA_2617 10985 +0.7 2.0 HMMPfam-Carbonic anhydrase-PF00484,SMART-Carbonic anhydrase-SM00947,SUPERFAMILY--SSF53056 compare
mRNA_3477 11845 +0.7 3.0 K07088 K07088 uncharacterized protein compare
mRNA_235 8603 +0.7 1.5 KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases compare
mRNA_256 8624 +0.7 1.1 K11254 H4 histone H4 compare
mRNA_2097 10465 +0.7 0.5 K03217 yidC, spoIIIJ, OXA1, ccfA YidC/Oxa1 family membrane protein insertase compare
mRNA_1367 9735 +0.7 2.9 K03233 EEF1G elongation factor 1-gamma compare
mRNA_4387 12755 +0.7 0.8 HMMPfam-Ctf8-PF09696 compare
mRNA_4144 12512 +0.7 3.6 K01669 phrB deoxyribodipyrimidine photo-lyase compare
mRNA_3848 12216 +0.7 2.4 KOG1817 Ribonuclease compare
mRNA_4635 13003 +0.7 3.7 Hypothetical Protein compare
mRNA_7187 15555 +0.7 1.6 K00799 GST, gst glutathione S-transferase compare
mRNA_8353 16721 +0.7 3.0 BLAST Clampless protein 1 [Leucoagaricus sp. SymC.cos] compare
mRNA_5571 13939 +0.7 1.2 K14546 UTP5, WDR43 U3 small nucleolar RNA-associated protein 5 compare
mRNA_6180 14548 +0.7 3.9 KOG0218 Mismatch repair MSH3 compare
mRNA_2644 11012 +0.7 0.9 SUPERFAMILY--SSF52058 compare
mRNA_2 8370 +0.7 0.9 PRINTS-Proline rich extensin signature-PR01217 compare
mRNA_2125 10493 +0.7 2.6 BLAST BA75_02480T0 [Komagataella pastoris] compare
mRNA_7577 15945 +0.7 2.4 Hypothetical Protein compare
mRNA_7355 15723 +0.7 2.3 HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232 compare
mRNA_3734 12102 +0.7 3.2 Interpro Protein HRI1 compare
mRNA_3493 11861 +0.7 2.8 K06944 K06944 uncharacterized protein compare
mRNA_1038 9406 +0.6 1.1 HMMPfam-Protein of unknown function (DUF2034)-PF10356 compare
mRNA_1095 9463 +0.6 1.4 KOG2741 Dimeric dihydrodiol dehydrogenase compare
mRNA_594 8962 +0.6 2.3 K16261 YAT yeast amino acid transporter compare
mRNA_7737 16105 +0.6 1.2 HMMPfam-Antibiotic biosynthesis monooxygenase-PF03992,SUPERFAMILY--SSF54909 compare
mRNA_2515 10883 +0.6 0.9 KOG0035 Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) compare
mRNA_1369 9737 +0.6 3.0 HMMPfam-Glutathione S-transferase, N-terminal domain-PF13417,ProSiteProfiles-Soluble glutathione S-transferase N-terminal domain profile.-PS50404,ProSiteProfiles-Soluble glutathione S-transferase C-terminal domain profile.-PS50405,SUPERFAMILY--SSF52833 compare
mRNA_2073 10441 +0.6 1.7 Hypothetical Protein compare
mRNA_2828 11196 +0.6 1.3 Hypothetical Protein compare
mRNA_8382 16750 +0.6 2.3 K00799 GST, gst glutathione S-transferase compare
mRNA_8279 16647 +0.6 1.4 BLAST Type-1 angiotensin II receptor-associated protein [Ch... compare
mRNA_2219 10587 +0.6 2.0 Hypothetical Protein compare
mRNA_709 9077 +0.6 1.4 K08775 BRCA2, FANCD1 breast cancer 2 susceptibility protein compare
mRNA_4805 13173 +0.6 1.4 ProSiteProfiles-BTB domain profile.-PS50097 compare
mRNA_3833 12201 +0.6 0.9 K15196 BRF1, GTF3B transcription factor IIIB 90 kDa subunit compare
mRNA_860 9228 +0.6 1.5 HMMPfam-PX domain-PF00787,HMMPfam-BAR domain-PF03114,ProSiteProfiles-PX domain profile.-PS50195,SMART-PhoX homologous domain, present in p47phox and p40phox.-SM00312,SUPERFAMILY--SSF103657,SUPERFAMILY--SSF64268 compare
mRNA_6185 14553 +0.6 1.5 SUPERFAMILY--SSF69118 compare
mRNA_6608 14976 +0.6 2.0 HMMPfam-Yqey-like protein-PF09424,SUPERFAMILY--SSF89095 compare
mRNA_6971 15339 +0.6 3.0 K03671 trxA thioredoxin 1 compare
mRNA_6192 14560 +0.6 1.6 Hypothetical Protein compare
mRNA_5798 14166 +0.6 1.7 KOG3433 Protein involved in meiotic recombination/predicted coiled-coil protein compare
mRNA_2070 10438 +0.6 2.5 Hypothetical Protein compare
mRNA_3631 11999 +0.6 0.6 Hypothetical Protein compare
mRNA_2281 10649 +0.6 0.6 K12190 VPS36, EAP45 ESCRT-II complex subunit VPS36 compare
mRNA_8099 16467 +0.6 1.5 HMMPfam-SUR7/PalI family-PF06687 compare
mRNA_8135 16503 +0.6 1.2 K00804 GGPS1 geranylgeranyl diphosphate synthase, type III compare
mRNA_7103 15471 +0.6 0.7 Hypothetical Protein compare
mRNA_702 9070 +0.6 0.6 BLAST RAN guanine nucleotide release factor [Moesziomyces a... compare
mRNA_6109 14477 +0.6 3.7 KOG1477 SPRY domain-containing proteins compare
mRNA_3794 12162 +0.6 1.4 KOG4618 Uncharacterized conserved protein compare
mRNA_8131 16499 +0.6 2.6 KOG2431 1, 2-alpha-mannosidase compare
mRNA_6269 14637 +0.6 2.5 KOG1336 Monodehydroascorbate/ferredoxin reductase compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in ypd buoyancy experiments

For ypd buoyancy unknown across organisms