Experiment setAFACS_All for Rhodosporidium toruloides IFO0880

Compare to:

Sorted No BODIPY Gate

200 most detrimental genes:

  gene name fitness t score description  
mRNA_224 8592 +2.4 2.0 K07300 chaA, CAX Ca2+-H+ antiporter compare
mRNA_3019 11387 +2.2 1.6 KOG2128 Ras GTPase-activating protein family - IQGAP compare
mRNA_274 8642 +2.1 2.4 BLAST Putative Pc16g06240 protein [Torrubiella hemipterigena] compare
mRNA_5620 13988 +2.1 1.2 HMMPfam-GRF zinc finger-PF06839 compare
mRNA_3244 11612 +1.9 2.8 Hypothetical Protein compare
mRNA_6429 14797 +1.8 2.4 BLAST putative protein [Melanopsichium pennsylvanicum 4] compare
mRNA_2820 11188 +1.8 0.8 HMMPfam-2-oxoacid dehydrogenases acyltransferase (catalytic domain)-PF00198,HMMPfam-Biotin-requiring enzyme-PF00364,HMMPfam-e3 binding domain-PF02817,SUPERFAMILY--SSF47005,SUPERFAMILY--SSF51230,SUPERFAMILY--SSF52777 compare
mRNA_2876 11244 +1.7 2.1 K18715 NUP159 nucleoporin NUP159 compare
mRNA_4290 12658 +1.6 2.1 Hypothetical Protein compare
mRNA_6212 14580 +1.4 1.3 SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045 compare
mRNA_7571 15939 +1.3 1.2 K11450 KDM1A, AOF2, LSD1 lysine-specific histone demethylase 1A compare
mRNA_4504 12872 +1.3 1.8 Hypothetical Protein compare
mRNA_7225 15593 +1.2 3.4 Hypothetical Protein compare
mRNA_8081 16449 +1.2 1.8 K00905 BCKDK [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase compare
mRNA_3955 12323 +1.2 0.9 K02355 fusA, GFM, EFG elongation factor G compare
mRNA_6401 14769 +1.1 1.8 HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112 compare
mRNA_5978 14346 +1.1 2.2 Hypothetical Protein compare
mRNA_5204 13572 +1.1 0.9 Hypothetical Protein compare
mRNA_8152 16520 +1.1 2.8 KOG2944 Glyoxalase compare
mRNA_3325 11693 +1.1 0.6 Hypothetical Protein compare
mRNA_8193 16561 +1.1 1.4 Hypothetical Protein compare
mRNA_1306 9674 +1.1 3.3 HMMPfam-RNase H-PF00075,ProSiteProfiles-RNase H domain profile.-PS50879,SUPERFAMILY--SSF53098 compare
mRNA_5540 13908 +1.1 7.7 Interpro GDP-fucose protein O-fucosyltransferase compare
mRNA_4464 12832 +1.1 2.0 Hypothetical Protein compare
mRNA_5608 13976 +1.1 2.9 K03018 RPC1, POLR3A DNA-directed RNA polymerase III subunit RPC1 compare
mRNA_4777 13145 +1.0 0.8 Hypothetical Protein compare
mRNA_998 9366 +1.0 2.7 Hypothetical Protein compare
mRNA_3833 12201 +1.0 1.1 K15196 BRF1, GTF3B transcription factor IIIB 90 kDa subunit compare
mRNA_3981 12349 +1.0 4.6 K10660 MARCH5 E3 ubiquitin-protein ligase MARCH5 compare
mRNA_2063 10431 +1.0 5.7 SUPERFAMILY--SSF140860 compare
mRNA_6706 15074 +1.0 2.9 K16261 YAT yeast amino acid transporter compare
mRNA_8189 16557 +1.0 3.4 HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474 compare
mRNA_2189 10557 +1.0 2.7 K11236 CDC24 cell division control protein 24 compare
mRNA_4861 13229 +0.9 1.9 BLAST NADH-ubiquinone oxidoreductase [Sanghuangporus baumii] compare
mRNA_6973 15341 +0.9 1.4 K11303 HAT1, KAT1 histone acetyltransferase 1 compare
mRNA_2185 10553 +0.9 1.4 HMMPfam-Copper fist DNA binding domain-PF00649,PRINTS-Copper fist domain signature-PR00617,ProSiteProfiles-Copper-fist DNA-binding domain profile.-PS50073,SMART-Copper-Fist-SM00412,SMART--SM01090,SUPERFAMILY--SSF57879 compare
mRNA_441 8809 +0.9 1.3 K13989 DERL2_3 Derlin-2/3 compare
mRNA_8467 16835 +0.9 1.9 Hypothetical Protein compare
mRNA_4632 13000 +0.9 1.7 K13107 RBMX2, IST3 RNA-binding motif protein, X-linked 2 compare
mRNA_2617 10985 +0.9 2.1 HMMPfam-Carbonic anhydrase-PF00484,SMART-Carbonic anhydrase-SM00947,SUPERFAMILY--SSF53056 compare
mRNA_7011 15379 +0.9 2.9 Hypothetical Protein compare
mRNA_3794 12162 +0.9 2.0 KOG4618 Uncharacterized conserved protein compare
mRNA_6141 14509 +0.9 1.8 HMMPfam-GGL domain-PF00631,SUPERFAMILY--SSF48670 compare
mRNA_5980 14348 +0.9 3.1 K12592 C1D, LRP1 exosome complex protein LRP1 compare
mRNA_428 8796 +0.9 2.5 HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735 compare
mRNA_2934 11302 +0.9 2.2 Hypothetical Protein compare
mRNA_6448 14816 +0.9 1.3 HMMPfam-F-box-like-PF12937 compare
mRNA_3745 12113 +0.9 0.6 BLAST protein of unknown function [Taphrina deformans PYCC ... compare
mRNA_1118 9486 +0.9 2.0 HMMPfam-RTA1 like protein-PF04479 compare
mRNA_8332 16700 +0.9 4.0 K10082 LMAN2, VIP36 lectin, mannose-binding 2 compare
mRNA_7480 15848 +0.8 0.7 K01868 TARS, thrS threonyl-tRNA synthetase compare
mRNA_2528 10896 +0.8 1.7 HMMPfam-Fungal chitosanase of glycosyl hydrolase group 75-PF07335 compare
mRNA_145 8513 +0.8 1.7 KOG3299 Uncharacterized conserved protein compare
mRNA_4992 13360 +0.8 2.7 Hypothetical Protein compare
mRNA_8476 16844 +0.8 1.6 BLAST glycoside hydrolase family 43 protein [Mycena chlorop... compare
mRNA_4263 12631 +0.8 0.9 K10416 DYNC1LI, DNCLI dynein light intermediate chain 1, cytosolic compare
mRNA_6530 14898 +0.8 3.1 K03809 wrbA NAD(P)H dehydrogenase (quinone) compare
mRNA_4716 13084 +0.8 0.5 SUPERFAMILY--SSF55753 compare
mRNA_895 9263 +0.8 -0.1 Hypothetical Protein compare
mRNA_1141 9509 +0.8 1.8 ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257 compare
mRNA_1384 9752 +0.8 2.2 KOG4472 Glycolipid 2-alpha-mannosyltransferase (alpha-1,2-mannosyltransferase) compare
mRNA_7428 15796 +0.8 1.5 Interpro XLF-Cernunnos, XRcc4-like factor, NHEJ component compare
mRNA_3559 11927 +0.8 0.5 K18622 ADD adducin compare
mRNA_3195 11563 +0.8 2.7 Hypothetical Protein compare
mRNA_5642 14010 +0.8 0.8 Interpro Mitochondrial inner-membrane-bound regulator compare
mRNA_6296 14664 +0.8 1.9 Hypothetical Protein compare
mRNA_2357 10725 +0.8 2.3 BLAST Immunoglobulin-like domain contaning protein [Rho... compare
mRNA_8121 16489 +0.8 1.2 Hypothetical Protein compare
mRNA_4526 12894 +0.8 3.7 K12446 E2.7.1.46 L-arabinokinase compare
mRNA_5647 14015 +0.8 3.5 KOG4719 Nuclear pore complex protein compare
mRNA_1155 9523 +0.8 1.9 ProSiteProfiles-CBS domain profile.-PS51371,SUPERFAMILY--SSF54631 compare
mRNA_182 8550 +0.8 0.8 K19828 MTG1 mitochondrial GTPase 1 compare
mRNA_8370 16738 +0.8 1.6 K12525 metL bifunctional aspartokinase / homoserine dehydrogenase 2 compare
mRNA_1260 9628 +0.8 8.0 Hypothetical Protein compare
mRNA_2126 10494 +0.8 2.4 Hypothetical Protein compare
mRNA_6860 15228 +0.8 2.2 K07513 ACAA1 acetyl-CoA acyltransferase 1 compare
mRNA_5054 13422 +0.8 1.2 Hypothetical Protein compare
mRNA_5021 13389 +0.8 2.5 K14347 SLC10A7, P7 solute carrier family 10 (sodium/bile acid cotransporter), member 7 compare
mRNA_7229 15597 +0.8 1.2 Hypothetical Protein compare
mRNA_1102 9470 +0.8 5.1 K03327 TC.MATE, SLC47A, norM, mdtK, dinF multidrug resistance protein, MATE family compare
mRNA_7449 15817 +0.7 1.7 BLAST GH19984 [Drosophila grimshawi] compare
mRNA_5592 13960 +0.7 2.6 HMMPfam-Alcohol acetyltransferase-PF07247,SUPERFAMILY--SSF52777 compare
mRNA_6771 15139 +0.7 0.4 Hypothetical Protein compare
mRNA_6688 15056 +0.7 1.7 BLAST Wings apart-like protein [Ceraceosorus bombacis] compare
mRNA_7106 15474 +0.7 1.0 K11313 SUPT3H, SPT3 transcription initiation protein SPT3 compare
mRNA_7146 15514 +0.7 1.9 Hypothetical Protein compare
mRNA_2543 10911 +0.7 2.7 Hypothetical Protein compare
mRNA_1088 9456 +0.7 2.9 KOG3179 Predicted glutamine synthetase compare
mRNA_4505 12873 +0.7 3.0 K18172 CMC2 COX assembly mitochondrial protein 2 compare
mRNA_4305 12673 +0.7 2.4 SUPERFAMILY--SSF69989 compare
mRNA_647 9015 +0.7 2.0 K09885 AQPF aquaporin rerated protein, other eukaryote compare
mRNA_2345 10713 +0.7 2.9 KOG1399 Flavin-containing monooxygenase compare
mRNA_2317 10685 +0.7 1.0 K02264 COX5A cytochrome c oxidase subunit 5a compare
mRNA_4171 12539 +0.7 1.5 KOG2806 Chitinase compare
mRNA_4806 13174 +0.7 2.5 Hypothetical Protein compare
mRNA_109 8477 +0.7 1.0 Hypothetical Protein compare
mRNA_7455 15823 +0.7 0.9 KOG1740 Predicted mitochondrial/chloroplast ribosomal protein S17 compare
mRNA_4213 12581 +0.7 0.7 K01673 cynT, can carbonic anhydrase compare
mRNA_7647 16015 +0.7 1.6 KOG2741 Dimeric dihydrodiol dehydrogenase compare
mRNA_7280 15648 +0.7 2.0 Hypothetical Protein compare
mRNA_596 8964 +0.7 2.3 Hypothetical Protein compare
mRNA_6775 15143 +0.7 0.1 K14784 CMS1 protein CMS1 compare
mRNA_7077 15445 +0.7 4.3 K18789 XGD1 xylogalacturonan beta-1,3-xylosyltransferase compare
mRNA_7790 16158 +0.7 0.6 Hypothetical Protein compare
mRNA_1742 10110 +0.7 1.9 SUPERFAMILY--SSF48097 compare
mRNA_5142 13510 +0.7 2.9 K13577 SLC25A10, DIC solute carrier family 25 (mitochondrial dicarboxylate transporter), member 10 compare
mRNA_5960 14328 +0.7 2.2 Hypothetical Protein compare
mRNA_5742 14110 +0.7 1.8 BLAST spindle pole body protein [Moesziomyces antarcticus T... compare
mRNA_7369 15737 +0.7 1.4 KOG1203 Predicted dehydrogenase compare
mRNA_2291 10659 +0.7 2.2 HMMPfam-von Willebrand factor type A domain-PF13519,ProSiteProfiles-VWFA domain profile.-PS50234,SUPERFAMILY--SSF53300 compare
mRNA_2089 10457 +0.7 3.2 KOG0637 Sucrose transporter and related proteins compare
mRNA_4406 12774 +0.7 3.3 KOG2100 Dipeptidyl aminopeptidase compare
mRNA_5652 14020 +0.7 1.3 KOG4443 Putative transcription factor HALR/MLL3, involved in embryonic development compare
mRNA_2915 11283 +0.7 1.8 Hypothetical Protein compare
mRNA_4169 12537 +0.7 2.3 K13299 GSTK1 glutathione S-transferase kappa 1 compare
mRNA_5040 13408 +0.7 3.3 K11987 PTGS2, COX2 prostaglandin-endoperoxide synthase 2 compare
mRNA_60 8428 +0.7 1.1 Hypothetical Protein compare
mRNA_5778 14146 +0.7 1.7 HMMPfam-bZIP transcription factor-PF00170,HMMPfam-Transcription factor PAP1-PF08601,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF111430,SUPERFAMILY--SSF57959 compare
mRNA_4703 13071 +0.7 1.1 Hypothetical Protein compare
mRNA_1096 9464 +0.7 1.2 KOG1611 Predicted short chain-type dehydrogenase compare
mRNA_7386 15754 +0.7 2.2 HMMPfam-F-box-like-PF12937 compare
mRNA_48 8416 +0.7 1.0 HMMPfam-Serine hydrolase (FSH1)-PF03959,SUPERFAMILY--SSF53474 compare
mRNA_4521 12889 +0.7 1.7 SUPERFAMILY--SSF117018 compare
mRNA_8255 16623 +0.7 2.0 K01792 E5.1.3.15 glucose-6-phosphate 1-epimerase compare
mRNA_1926 10294 +0.7 3.2 HMMPfam-GDSL-like Lipase/Acylhydrolase family-PF13472,SUPERFAMILY--SSF52266 compare
mRNA_965 9333 +0.7 2.0 Hypothetical Protein compare
mRNA_1614 9982 +0.7 2.5 KOG2819 Uncharacterized conserved protein compare
mRNA_3797 12165 +0.7 2.1 Hypothetical Protein compare
mRNA_2699 11067 +0.7 1.2 K08066 NFYC nuclear transcription factor Y, gamma compare
mRNA_4564 12932 +0.7 3.3 K11844 USP16_45 ubiquitin carboxyl-terminal hydrolase 16/45 compare
mRNA_2645 11013 +0.7 1.4 Hypothetical Protein compare
mRNA_6061 14429 +0.7 1.9 KOG3772 M-phase inducer phosphatase compare
mRNA_6194 14562 +0.7 2.8 SUPERFAMILY--SSF56112 compare
mRNA_5611 13979 +0.7 1.0 HMMPfam-Protein of unknown function (DUF2433)-PF10360 compare
mRNA_7989 16357 +0.7 2.0 HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232 compare
mRNA_1347 9715 +0.7 1.4 Hypothetical Protein compare
mRNA_836 9204 +0.6 1.3 K17387 KIF23 kinesin family member 23 compare
mRNA_8329 16697 +0.6 1.0 KOG0527 HMG-box transcription factor compare
mRNA_5497 13865 +0.6 1.9 KOG3872 FOG FHA domain compare
mRNA_5217 13585 +0.6 2.0 Hypothetical Protein compare
mRNA_1110 9478 +0.6 2.5 Hypothetical Protein compare
mRNA_5624 13992 +0.6 0.6 KOG1611 Predicted short chain-type dehydrogenase compare
mRNA_6854 15222 +0.6 2.6 K16219 NTMT1, METTL11A, NTM1 protein N-terminal methyltransferase compare
mRNA_2230 10598 +0.6 0.9 HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112 compare
mRNA_4762 13130 +0.6 0.9 HMMPfam-Fungal cellulose binding domain-PF00734,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180 compare
mRNA_2742 11110 +0.6 3.0 K18880 HCD1 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase compare
mRNA_6595 14963 +0.6 3.2 Hypothetical Protein compare
mRNA_6798 15166 +0.6 2.4 Hypothetical Protein compare
mRNA_3582 11950 +0.6 3.5 HMMPfam-Polycystin cation channel-PF08016 compare
mRNA_2198 10566 +0.6 1.4 Hypothetical Protein compare
mRNA_158 8526 +0.6 1.4 BLAST expressed protein [Cryptococcus neoformans var. neofo... compare
mRNA_2407 10775 +0.6 0.7 K10880 XRCC3 DNA-repair protein XRCC3 compare
mRNA_6046 14414 +0.6 2.2 Hypothetical Protein compare
mRNA_3770 12138 +0.6 1.6 K12606 RCD1, CNOT9, CAF40 CCR4-NOT transcription complex subunit 9 compare
mRNA_8353 16721 +0.6 1.8 BLAST Clampless protein 1 [Leucoagaricus sp. SymC.cos] compare
mRNA_1272 9640 +0.6 1.7 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 compare
mRNA_8357 16725 +0.6 2.2 K01739 metB cystathionine gamma-synthase compare
mRNA_6431 14799 +0.6 3.1 Hypothetical Protein compare
mRNA_1566 9934 +0.6 1.6 Hypothetical Protein compare
mRNA_5874 14242 +0.6 1.9 K04536 GNB1 guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 compare
mRNA_4349 12717 +0.6 0.6 K02873 RP-L13e, RPL13 large subunit ribosomal protein L13e compare
mRNA_132 8500 +0.6 1.1 K16944 SEPT7, CDC3 septin 7 compare
mRNA_5730 14098 +0.6 1.9 SUPERFAMILY--SSF47113 compare
mRNA_7975 16343 +0.6 2.0 KOG0762 Mitochondrial carrier protein compare
mRNA_456 8824 +0.6 1.8 Hypothetical Protein compare
mRNA_6492 14860 +0.6 2.0 KOG3269 Predicted membrane protein compare
mRNA_7542 15910 +0.6 1.6 HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473 compare
mRNA_2721 11089 +0.6 4.4 BLAST metallophosphoesterase domain-containing protein [Muc... compare
mRNA_5706 14074 +0.6 1.9 Hypothetical Protein compare
mRNA_3342 11710 +0.6 2.4 PRINTS-Proline rich extensin signature-PR01217 compare
mRNA_3792 12160 +0.6 1.1 K12811 DDX46, PRP5 ATP-dependent RNA helicase DDX46/PRP5 compare
mRNA_942 9310 +0.6 1.4 KOG1743 Ferric reductase-like proteins compare
mRNA_4757 13125 +0.6 3.8 Hypothetical Protein compare
mRNA_4241 12609 +0.6 2.6 Hypothetical Protein compare
mRNA_8149 16517 +0.6 1.5 KOG1198 Zinc-binding oxidoreductase compare
mRNA_7674 16042 +0.6 0.3 SUPERFAMILY--SSF48371 compare
mRNA_8126 16494 +0.6 3.2 BLAST putative 15-O-acetyltransferase Tri3 [Moniliophthora ... compare
mRNA_3727 12095 +0.6 1.6 SMART-Leucine rich repeat, ribonuclease inhibitor type-SM00368,SUPERFAMILY--SSF52047 compare
mRNA_5310 13678 +0.6 2.0 Hypothetical Protein compare
mRNA_3474 11842 +0.6 0.8 HMMPfam-Protein of unknown function (DUF667)-PF05018 compare
mRNA_4899 13267 +0.6 0.8 KOG4705 Uncharacterized conserved protein compare
mRNA_6392 14760 +0.6 2.6 KOG4533 Uncharacterized conserved protein compare
mRNA_6128 14496 +0.6 2.6 BLAST DEHA2B11858p [Debaryomyces hansenii CBS767] compare
mRNA_5518 13886 +0.6 1.4 SUPERFAMILY--SSF49599 compare
mRNA_3669 12037 +0.6 1.3 KOG1756 Histone 2A compare
mRNA_235 8603 +0.6 1.3 KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases compare
mRNA_5465 13833 +0.6 1.5 Hypothetical Protein compare
mRNA_2005 10373 +0.6 1.6 K08286 E2.7.11.- protein-serine/threonine kinase compare
mRNA_3631 11999 +0.6 0.5 Hypothetical Protein compare
mRNA_5804 14172 +0.6 1.0 Hypothetical Protein compare
mRNA_2480 10848 +0.6 1.5 KOG0907 Thioredoxin compare
mRNA_6711 15079 +0.6 1.6 Hypothetical Protein compare
mRNA_7823 16191 +0.6 0.9 K03011 RPB3, POLR2C DNA-directed RNA polymerase II subunit RPB3 compare
mRNA_3232 11600 +0.6 0.6 ProSiteProfiles-BRCT domain profile.-PS50172 compare
mRNA_7087 15455 +0.6 1.5 Hypothetical Protein compare
mRNA_5833 14201 +0.6 2.5 K09705 K09705 uncharacterized protein compare
mRNA_4618 12986 +0.6 0.6 Hypothetical Protein compare
mRNA_7268 15636 +0.6 1.9 Hypothetical Protein compare
mRNA_203 8571 +0.6 1.9 SUPERFAMILY--SSF51197 compare
mRNA_3677 12045 +0.6 2.8 KOG0266 WD40 repeat-containing protein compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in facs on lipid accumulation experiments

For facs on lipid accumulation CN120 across organisms