Experiment setAFACS_Top for Rhodosporidium toruloides IFO0880

Compare to:

Sorted High BODIPY Gate

200 most detrimental genes:

  gene name fitness t score description  
mRNA_224 8592 +3.4 2.4 K07300 chaA, CAX Ca2+-H+ antiporter compare
mRNA_1934 10302 +2.4 11.7 HMMPfam-Cryptococcal mannosyltransferase 1-PF11735 compare
mRNA_7833 16201 +2.3 11.4 HMMPfam-Cryptococcal mannosyltransferase 1-PF11735 compare
mRNA_2003 10371 +2.2 11.4 KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif compare
mRNA_6553 14921 +2.0 8.4 SUPERFAMILY--SSF52266 compare
mRNA_5151 13519 +1.9 5.3 HMMPfam-SUR7/PalI family-PF06687 compare
mRNA_2782 11150 +1.8 2.1 HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232 compare
mRNA_1627 9995 +1.8 1.7 K18551 SDT1 pyrimidine and pyridine-specific 5'-nucleotidase compare
mRNA_2189 10557 +1.8 5.5 K11236 CDC24 cell division control protein 24 compare
mRNA_1614 9982 +1.8 4.2 KOG2819 Uncharacterized conserved protein compare
mRNA_2521 10889 +1.8 1.1 BLAST beta-glucosidase 1 precursor [Aspergillus rambellii] compare
mRNA_3753 12121 +1.7 9.1 K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase compare
mRNA_5144 13512 +1.7 4.4 BLAST putative mit domain-containing protein [Erysiphe neca... compare
mRNA_6212 14580 +1.7 1.1 SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045 compare
mRNA_5611 13979 +1.5 1.5 HMMPfam-Protein of unknown function (DUF2433)-PF10360 compare
mRNA_2437 10805 +1.5 8.1 Hypothetical Protein compare
mRNA_7571 15939 +1.5 1.3 K11450 KDM1A, AOF2, LSD1 lysine-specific histone demethylase 1A compare
mRNA_4801 13169 +1.5 2.1 HMMPfam-Uncharacterized alpha/beta hydrolase domain (DUF2235)-PF09994 compare
mRNA_1844 10212 +1.4 3.1 K16066 ydfG 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase compare
mRNA_3807 12175 +1.4 13.4 HMMPfam-Docking domain of Afi1 for Arf3 in vesicle trafficking-PF07792,HMMPfam-Stabilization of polarity axis-PF08616 compare
mRNA_5145 13513 +1.4 8.1 Hypothetical Protein compare
mRNA_3244 11612 +1.3 1.6 Hypothetical Protein compare
mRNA_3302 11670 +1.3 3.7 K07232 chaC cation transport protein ChaC compare
mRNA_8332 16700 +1.3 5.6 K10082 LMAN2, VIP36 lectin, mannose-binding 2 compare
mRNA_5809 14177 +1.3 3.2 KOG2979 Protein involved in DNA repair compare
mRNA_7515 15883 +1.3 12.5 K07827 KRAS, KRAS2 GTPase KRas compare
mRNA_7197 15565 +1.3 1.4 KOG0490 Transcription factor, contains HOX domain compare
mRNA_8467 16835 +1.3 2.5 Hypothetical Protein compare
mRNA_6883 15251 +1.3 7.4 BLAST similar to An03g02750 [Aspergillus kawachii IFO 4308] compare
mRNA_4968 13336 +1.3 5.1 KOG4464 Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) compare
mRNA_7901 16269 +1.2 1.9 KOG1605 TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) compare
mRNA_1654 10022 +1.2 0.6 BLAST expressed protein [Cryptococcus neoformans var. neofo... compare
mRNA_7416 15784 +1.2 0.2 Hypothetical Protein compare
mRNA_7604 15972 +1.2 1.7 K09549 PFDN2 prefoldin subunit 2 compare
mRNA_8363 16731 +1.2 3.1 KOG1693 emp24/gp25L/p24 family of membrane trafficking proteins compare
mRNA_6123 14491 +1.2 2.0 BLAST DNA polymerase [Rhizoctonia solani] compare
mRNA_3729 12097 +1.1 3.7 K15280 SLC35C2 solute carrier family 35, member C2 compare
mRNA_4464 12832 +1.1 1.8 Hypothetical Protein compare
mRNA_5215 13583 +1.1 1.7 KOG1940 Zn-finger protein compare
mRNA_4660 13028 +1.1 1.8 Interpro Transcription-silencing protein, cryptic loci regulator Clr2 compare
mRNA_221 8589 +1.1 6.0 HMMPfam-Squalene/phytoene synthase-PF00494,ProSitePatterns-Squalene and phytoene synthases signature 2.-PS01045,SUPERFAMILY--SSF48576,TIGRFAM-CarR_dom_SF lycopene cyclase domain-TIGR03462 compare
mRNA_1755 10123 +1.1 7.0 K00326 E1.6.2.2 cytochrome-b5 reductase compare
mRNA_4777 13145 +1.1 0.8 Hypothetical Protein compare
mRNA_7071 15439 +1.1 3.0 BLAST histone H3 h3.1 [Schizosaccharomyces japonicus yF... compare
mRNA_1808 10176 +1.1 3.8 Hypothetical Protein compare
mRNA_6301 14669 +1.1 2.3 Hypothetical Protein compare
mRNA_3955 12323 +1.0 0.8 K02355 fusA, GFM, EFG elongation factor G compare
mRNA_5978 14346 +1.0 1.7 Hypothetical Protein compare
mRNA_132 8500 +1.0 1.5 K16944 SEPT7, CDC3 septin 7 compare
mRNA_4022 12390 +1.0 2.5 KOG2661 Peptidase family M48 compare
mRNA_6664 15032 +1.0 1.1 K03165 TOP3 DNA topoisomerase III compare
mRNA_850 9218 +1.0 2.2 SUPERFAMILY--SSF52047 compare
mRNA_1118 9486 +1.0 3.4 HMMPfam-RTA1 like protein-PF04479 compare
mRNA_2599 10967 +1.0 1.2 KOG2619 Fucosyltransferase compare
mRNA_7823 16191 +1.0 1.3 K03011 RPB3, POLR2C DNA-directed RNA polymerase II subunit RPB3 compare
mRNA_2185 10553 +1.0 1.9 HMMPfam-Copper fist DNA binding domain-PF00649,PRINTS-Copper fist domain signature-PR00617,ProSiteProfiles-Copper-fist DNA-binding domain profile.-PS50073,SMART-Copper-Fist-SM00412,SMART--SM01090,SUPERFAMILY--SSF57879 compare
mRNA_4153 12521 +1.0 3.3 K20347 TMED2, EMP24 p24 family protein beta-1 compare
mRNA_3439 11807 +1.0 3.4 KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins compare
mRNA_2270 10638 +1.0 4.3 K19833 CLA4 serine/threonine-protein kinase CLA4 compare
mRNA_5399 13767 +1.0 3.2 K07078 K07078 uncharacterized protein compare
mRNA_4563 12931 +1.0 5.3 KOG1601 GATA-4/5/6 transcription factors compare
mRNA_934 9302 +1.0 3.2 K18726 FAF2, UBXD8 FAS-associated factor 2 compare
mRNA_2820 11188 +1.0 0.3 HMMPfam-2-oxoacid dehydrogenases acyltransferase (catalytic domain)-PF00198,HMMPfam-Biotin-requiring enzyme-PF00364,HMMPfam-e3 binding domain-PF02817,SUPERFAMILY--SSF47005,SUPERFAMILY--SSF51230,SUPERFAMILY--SSF52777 compare
mRNA_5142 13510 +1.0 3.7 K13577 SLC25A10, DIC solute carrier family 25 (mitochondrial dicarboxylate transporter), member 10 compare
mRNA_6182 14550 +1.0 4.1 K06665 SSN6 glucose repression mediator protein compare
mRNA_658 9026 +1.0 6.2 K11842 USP12_46 ubiquitin carboxyl-terminal hydrolase 12/46 compare
mRNA_5192 13560 +1.0 1.7 KOG2814 Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family) compare
mRNA_6215 14583 +1.0 2.7 Hypothetical Protein compare
mRNA_2358 10726 +1.0 0.9 Hypothetical Protein compare
mRNA_5040 13408 +0.9 3.8 K11987 PTGS2, COX2 prostaglandin-endoperoxide synthase 2 compare
mRNA_4349 12717 +0.9 0.8 K02873 RP-L13e, RPL13 large subunit ribosomal protein L13e compare
mRNA_4392 12760 +0.9 0.9 KOG3069 Peroxisomal NUDIX hydrolase compare
mRNA_3299 11667 +0.9 4.9 K19704 PTC1 protein phosphatase PTC1 compare
mRNA_461 8829 +0.9 2.3 Hypothetical Protein compare
mRNA_7225 15593 +0.9 2.1 Hypothetical Protein compare
mRNA_2509 10877 +0.9 1.6 HMMPfam-PI31 proteasome regulator-PF08577,HMMPfam-PI31 proteasome regulator N-terminal-PF11566 compare
mRNA_6230 14598 +0.9 3.1 K10688 UBE2W, UBC16 ubiquitin-conjugating enzyme E2 W compare
mRNA_4662 13030 +0.9 1.8 K20352 TMED10, ERV25 p24 family protein delta-1 compare
mRNA_6706 15074 +0.9 2.6 K16261 YAT yeast amino acid transporter compare
mRNA_5606 13974 +0.9 2.1 HMMPfam-Glycosyl hydrolase family 61-PF03443 compare
mRNA_3669 12037 +0.9 1.7 KOG1756 Histone 2A compare
mRNA_7333 15701 +0.9 2.9 SUPERFAMILY--SSF52047 compare
mRNA_6387 14755 +0.9 2.5 Hypothetical Protein compare
mRNA_1519 9887 +0.9 3.4 K03434 PIGL N-acetylglucosaminylphosphatidylinositol deacetylase compare
mRNA_6385 14753 +0.9 0.5 K03107 SRP68 signal recognition particle subunit SRP68 compare
mRNA_1321 9689 +0.9 0.8 K01687 ilvD dihydroxy-acid dehydratase compare
mRNA_5533 13901 +0.9 1.3 Hypothetical Protein compare
mRNA_2757 11125 +0.9 1.9 Hypothetical Protein compare
mRNA_6835 15203 +0.9 3.5 Hypothetical Protein compare
mRNA_4966 13334 +0.9 1.0 Hypothetical Protein compare
mRNA_5540 13908 +0.9 5.9 Interpro GDP-fucose protein O-fucosyltransferase compare
mRNA_7078 15446 +0.9 0.8 Hypothetical Protein compare
mRNA_3646 12014 +0.9 7.4 Hypothetical Protein compare
mRNA_4171 12539 +0.9 2.1 KOG2806 Chitinase compare
mRNA_4296 12664 +0.9 2.8 Hypothetical Protein compare
mRNA_5147 13515 +0.9 4.0 Hypothetical Protein compare
mRNA_7111 15479 +0.9 2.9 Interpro Subunit 11 of the general transcription factor TFIIH compare
mRNA_6823 15191 +0.9 1.0 BLAST TNFR/NGFR cysteine-rich region family protein [Rh... compare
mRNA_5729 14097 +0.9 1.2 HMMPfam-MT-A70-PF05063,ProSiteProfiles-MT-A70-like family profile.-PS51143 compare
mRNA_2528 10896 +0.9 1.7 HMMPfam-Fungal chitosanase of glycosyl hydrolase group 75-PF07335 compare
mRNA_3597 11965 +0.9 1.2 K15562 BUR1, SGV1 serine/threonine-protein kinase BUR1 compare
mRNA_1995 10363 +0.8 1.7 KOG0062 ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b compare
mRNA_7229 15597 +0.8 1.2 Hypothetical Protein compare
mRNA_6097 14465 +0.8 4.6 KOG4313 Thiamine pyrophosphokinase compare
mRNA_5754 14122 +0.8 2.6 KOG1721 FOG Zn-finger compare
mRNA_4724 13092 +0.8 3.2 Hypothetical Protein compare
mRNA_233 8601 +0.8 1.8 K06287 maf septum formation protein compare
mRNA_5720 14088 +0.8 3.7 K04392 RAC1 Ras-related C3 botulinum toxin substrate 1 compare
mRNA_7822 16190 +0.8 0.9 Hypothetical Protein compare
mRNA_8118 16486 +0.8 2.4 Hypothetical Protein compare
mRNA_1444 9812 +0.8 2.2 KOG4173 Alpha-SNAP protein compare
mRNA_1428 9796 +0.8 1.6 HMMPfam-Protein of unknown function (DUF3237)-PF11578 compare
mRNA_2487 10855 +0.8 1.8 BLAST putative protein [Melanopsichium pennsylvanicum 4] compare
mRNA_7278 15646 +0.8 5.3 HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701 compare
mRNA_8171 16539 +0.8 2.0 HMMPfam-DnaJ domain-PF00226,ProSiteProfiles-dnaJ domain profile.-PS50076,SMART-DnaJ molecular chaperone homology domain-SM00271,SUPERFAMILY--SSF46565 compare
mRNA_5642 14010 +0.8 0.7 Interpro Mitochondrial inner-membrane-bound regulator compare
mRNA_3746 12114 +0.8 1.1 Hypothetical Protein compare
mRNA_4917 13285 +0.8 0.9 KOG2920 Predicted methyltransferase compare
mRNA_7170 15538 +0.8 3.6 Hypothetical Protein compare
mRNA_4526 12894 +0.8 3.1 K12446 E2.7.1.46 L-arabinokinase compare
mRNA_5624 13992 +0.8 0.8 KOG1611 Predicted short chain-type dehydrogenase compare
mRNA_7113 15481 +0.8 1.2 Hypothetical Protein compare
mRNA_3745 12113 +0.8 0.7 BLAST protein of unknown function [Taphrina deformans PYCC ... compare
mRNA_5234 13602 +0.8 1.3 KOG0725 Reductases with broad range of substrate specificities compare
mRNA_1306 9674 +0.8 2.0 HMMPfam-RNase H-PF00075,ProSiteProfiles-RNase H domain profile.-PS50879,SUPERFAMILY--SSF53098 compare
mRNA_7587 15955 +0.8 4.4 HMMPfam-Protein of unknown function (DUF2413)-PF10310 compare
mRNA_4725 13093 +0.8 1.3 Hypothetical Protein compare
mRNA_2645 11013 +0.8 2.4 Hypothetical Protein compare
mRNA_5126 13494 +0.8 2.2 Hypothetical Protein compare
mRNA_1282 9650 +0.8 0.8 Hypothetical Protein compare
mRNA_4955 13323 +0.8 0.5 K20306 TRAPPC9, TRS120 trafficking protein particle complex subunit 9 compare
mRNA_8152 16520 +0.8 1.6 KOG2944 Glyoxalase compare
mRNA_3897 12265 +0.8 2.0 K00459 ncd2, npd nitronate monooxygenase compare
mRNA_7378 15746 +0.8 1.2 KOG1180 Acyl-CoA synthetase compare
mRNA_6284 14652 +0.8 3.7 BLAST macrofage activating glycoprotein, putative [Rhizocto... compare
mRNA_4064 12432 +0.8 1.9 HMMPfam-Rdx family-PF10262,SUPERFAMILY--SSF52833 compare
mRNA_6958 15326 +0.8 3.3 K09238 ACE2 metallothionein expression activator compare
mRNA_7455 15823 +0.8 0.8 KOG1740 Predicted mitochondrial/chloroplast ribosomal protein S17 compare
mRNA_4569 12937 +0.8 0.7 HMMPfam-Integral peroxisomal membrane peroxin-PF06398 compare
mRNA_3034 11402 +0.8 3.5 K05767 IQGAP2_3 Ras GTPase-activating-like protein IQGAP2/3 compare
mRNA_4385 12753 +0.8 2.2 HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713 compare
mRNA_6798 15166 +0.8 3.0 Hypothetical Protein compare
mRNA_4672 13040 +0.8 1.6 K11979 UBR7 E3 ubiquitin-protein ligase UBR7 compare
mRNA_4369 12737 +0.8 0.7 K03671 trxA thioredoxin 1 compare
mRNA_217 8585 +0.8 3.5 K02292 crtO beta-carotene ketolase (CrtO type) compare
mRNA_1567 9935 +0.8 3.9 KOG4129 Exopolyphosphatases and related proteins compare
mRNA_3981 12349 +0.8 2.5 K10660 MARCH5 E3 ubiquitin-protein ligase MARCH5 compare
mRNA_2294 10662 +0.8 2.1 KOG4131 Ngg1-interacting factor 3 protein NIF3L1 compare
mRNA_4023 12391 +0.8 2.2 K01061 E3.1.1.45 carboxymethylenebutenolidase compare
mRNA_4137 12505 +0.8 5.1 BLAST putative protein [Melanopsichium pennsylvanicum 4] compare
mRNA_7062 15430 +0.8 1.3 HMMPfam-N-acetyltransferase-PF00797,SUPERFAMILY--SSF54001 compare
mRNA_3207 11575 +0.8 4.0 Hypothetical Protein compare
mRNA_723 9091 +0.8 4.3 K07127 uraH, pucM, hiuH 5-hydroxyisourate hydrolase compare
mRNA_1103 9471 +0.8 2.0 KOG0252 Inorganic phosphate transporter compare
mRNA_6751 15119 +0.8 3.5 K10578 UBE2J1, NCUBE1, UBC6 ubiquitin-conjugating enzyme E2 J1 compare
mRNA_7087 15455 +0.8 1.6 Hypothetical Protein compare
mRNA_6487 14855 +0.8 4.2 K11237 BEM1 bud emergence protein 1 compare
mRNA_657 9025 +0.8 1.7 Hypothetical Protein compare
mRNA_5216 13584 +0.8 0.9 K04648 DCTN1 dynactin 1 compare
mRNA_7011 15379 +0.8 2.3 Hypothetical Protein compare
mRNA_5020 13388 +0.8 1.5 K20178 VPS8 vacuolar protein sorting-associated protein 8 compare
mRNA_5382 13750 +0.8 2.1 Hypothetical Protein compare
mRNA_5518 13886 +0.7 2.2 SUPERFAMILY--SSF49599 compare
mRNA_5193 13561 +0.7 2.5 KOG0253 Synaptic vesicle transporter SV2 (major facilitator superfamily) compare
mRNA_5008 13376 +0.7 2.1 KOG2319 Vacuolar assembly/sorting protein VPS9 compare
mRNA_2851 11219 +0.7 3.3 SUPERFAMILY--SSF52047 compare
mRNA_2751 11119 +0.7 3.1 HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047 compare
mRNA_7482 15850 +0.7 1.7 Hypothetical Protein compare
mRNA_3631 11999 +0.7 0.4 Hypothetical Protein compare
mRNA_6688 15056 +0.7 1.0 BLAST Wings apart-like protein [Ceraceosorus bombacis] compare
mRNA_4280 12648 +0.7 4.0 HMMPfam-Actin interacting protein 3-PF03915,SMART-Actin interacting protein 3-SM00806 compare
mRNA_1946 10314 +0.7 2.0 KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif compare
mRNA_1864 10232 +0.7 0.6 SUPERFAMILY--SSF53300 compare
mRNA_6061 14429 +0.7 1.6 KOG3772 M-phase inducer phosphatase compare
mRNA_3931 12299 +0.7 4.2 BLAST protein [Lichtheimia corymbifera JMRC-FSU-9682] compare
mRNA_5153 13521 +0.7 3.5 HMMPfam-Secretory lipase-PF03583,PIRSF--PIRSF029171,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF53474 compare
mRNA_7393 15761 +0.7 2.4 HMMPfam-Velvet factor-PF11754 compare
mRNA_3835 12203 +0.7 3.1 K09260 MEF2A MADS-box transcription enhancer factor 2A compare
mRNA_1240 9608 +0.7 1.8 Interpro Protein of unknown function (DUF1275) 0 compare
mRNA_6711 15079 +0.7 1.9 Hypothetical Protein compare
mRNA_3792 12160 +0.7 0.7 K12811 DDX46, PRP5 ATP-dependent RNA helicase DDX46/PRP5 compare
mRNA_1141 9509 +0.7 1.8 ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257 compare
mRNA_6464 14832 +0.7 3.2 KOG1609 Protein involved in mRNA turnover and stability compare
mRNA_2604 10972 +0.7 3.0 BLAST Esterase, SGNH hydrolase-type domain protein [Rho... compare
mRNA_7280 15648 +0.7 2.2 Hypothetical Protein compare
mRNA_2295 10663 +0.7 2.3 BLAST CsbD-like [Xanthophyllomyces dendrorhous] compare
mRNA_1154 9522 +0.7 2.6 Hypothetical Protein compare
mRNA_7847 16215 +0.7 2.4 KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily compare
mRNA_33 8401 +0.7 4.3 HMMPfam-Myosin-binding striated muscle assembly central-PF11701,SUPERFAMILY--SSF48371 compare
mRNA_2293 10661 +0.7 2.2 BLAST splicing arginine serine-rich 12 [Moesziomyces an... compare
mRNA_8443 16811 +0.7 1.4 Hypothetical Protein compare
mRNA_7881 16249 +0.7 1.3 Hypothetical Protein compare
mRNA_884 9252 +0.7 1.4 Hypothetical Protein compare
mRNA_5935 14303 +0.7 1.0 HMMPfam-Homeobox KN domain-PF05920,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SUPERFAMILY--SSF46689 compare
mRNA_2211 10579 +0.7 0.8 K09486 HYOU1 hypoxia up-regulated 1 compare
mRNA_7522 15890 +0.7 4.2 HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SMART-helix loop helix domain-SM00353,SUPERFAMILY--SSF47459 compare
mRNA_5620 13988 +0.7 0.2 HMMPfam-GRF zinc finger-PF06839 compare
mRNA_8276 16644 +0.7 6.2 K06630 YWHAE 14-3-3 protein epsilon compare
mRNA_7941 16309 +0.7 1.9 Hypothetical Protein compare
mRNA_7808 16176 +0.7 1.3 K20183 VPS39, VAM6 Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39 compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in facs on lipid accumulation experiments

For facs on lipid accumulation CN120 across organisms