Experiment setARA_MRA for Rhodosporidium toruloides IFO0880

Compare to:

YNB Methylricinoleic Acid

200 most detrimental genes:

  gene name fitness t score description  
mRNA_2796 11164 +4.1 2.3 K08286 E2.7.11.- protein-serine/threonine kinase compare
mRNA_699 9067 +3.8 10.4 K20289 COG2 conserved oligomeric Golgi complex subunit 2 compare
mRNA_4878 13246 +3.7 21.6 K04348 PPP3C, CNA serine/threonine-protein phosphatase 2B catalytic subunit compare
mRNA_3307 11675 +3.6 23.4 K06268 PPP3R, CNB serine/threonine-protein phosphatase 2B regulatory subunit compare
mRNA_3729 12097 +3.5 10.5 K15280 SLC35C2 solute carrier family 35, member C2 compare
mRNA_1755 10123 +3.4 18.0 K00326 E1.6.2.2 cytochrome-b5 reductase compare
mRNA_6553 14921 +3.4 13.8 SUPERFAMILY--SSF52266 compare
mRNA_2270 10638 +3.2 13.4 K19833 CLA4 serine/threonine-protein kinase CLA4 compare
mRNA_8230 16598 +3.1 11.1 K09668 LARGE glycosyltransferase-like protein LARGE compare
mRNA_1934 10302 +3.0 14.4 HMMPfam-Cryptococcal mannosyltransferase 1-PF11735 compare
mRNA_5720 14088 +2.8 15.1 K04392 RAC1 Ras-related C3 botulinum toxin substrate 1 compare
mRNA_4955 13323 +2.7 2.4 K20306 TRAPPC9, TRS120 trafficking protein particle complex subunit 9 compare
mRNA_1677 10045 +2.6 17.5 K15620 GOLPH3, GPP34 golgi phosphoprotein 3 compare
mRNA_3753 12121 +2.5 17.7 K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase compare
mRNA_7833 16201 +2.4 9.7 HMMPfam-Cryptococcal mannosyltransferase 1-PF11735 compare
mRNA_7515 15883 +2.3 21.7 K07827 KRAS, KRAS2 GTPase KRas compare
mRNA_2876 11244 +2.3 3.2 K18715 NUP159 nucleoporin NUP159 compare
mRNA_7071 15439 +2.2 3.8 BLAST histone H3 h3.1 [Schizosaccharomyces japonicus yF... compare
mRNA_4866 13234 +2.1 1.9 KOG2881 Predicted membrane protein compare
mRNA_604 8972 +2.1 4.7 K17871 ndh1 NADH-ubiquinone reductase (non-electrogenic) compare
mRNA_2189 10557 +2.1 6.4 K11236 CDC24 cell division control protein 24 compare
mRNA_3302 11670 +2.1 6.3 K07232 chaC cation transport protein ChaC compare
mRNA_6883 15251 +2.0 8.6 BLAST similar to An03g02750 [Aspergillus kawachii IFO 4308] compare
mRNA_811 9179 +2.0 4.6 Interpro Glycosyl-transferase for dystroglycan compare
mRNA_5144 13512 +2.0 4.6 BLAST putative mit domain-containing protein [Erysiphe neca... compare
mRNA_1000 9368 +1.9 7.0 BLAST glycosyltransferase 2 [Moniliophthora roreri MCA ... compare
mRNA_2131 10499 +1.9 4.4 K09580 PDIA1, P4HB protein disulfide-isomerase A1 compare
mRNA_1134 9502 +1.8 2.9 K10685 UBLE1B, SAE2, UBA2 ubiquitin-like 1-activating enzyme E1 B compare
mRNA_1314 9682 +1.8 3.5 BLAST carboxymethylenebutenolidase [Rhizoctonia solani AG-1... compare
mRNA_2372 10740 +1.8 4.5 Hypothetical Protein compare
mRNA_942 9310 +1.8 4.8 KOG1743 Ferric reductase-like proteins compare
mRNA_33 8401 +1.8 8.3 HMMPfam-Myosin-binding striated muscle assembly central-PF11701,SUPERFAMILY--SSF48371 compare
mRNA_1538 9906 +1.8 2.9 K20307 TRAPPC10, TRS130 trafficking protein particle complex subunit 10 compare
mRNA_6513 14881 +1.8 11.7 HMMPfam-Glycosyl transferase family 90-PF05686,SMART-Putative lipopolysaccharide-modifying enzyme.-SM00672 compare
mRNA_209 8577 +1.8 12.4 K12571 PAN2 PAB-dependent poly(A)-specific ribonuclease subunit 2 compare
mRNA_2741 11109 +1.8 2.7 HMMPfam-Telomeric single stranded DNA binding POT1/CDC13-PF02765,SUPERFAMILY--SSF50249 compare
mRNA_4968 13336 +1.8 7.2 KOG4464 Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) compare
mRNA_6958 15326 +1.8 5.1 K09238 ACE2 metallothionein expression activator compare
mRNA_5102 13470 +1.8 12.0 KOG0619 FOG Leucine rich repeat compare
mRNA_5540 13908 +1.7 12.1 Interpro GDP-fucose protein O-fucosyltransferase compare
mRNA_2227 10595 +1.7 1.7 K12392 AP1B1 AP-1 complex subunit beta-1 compare
mRNA_3639 12007 +1.7 1.1 K11204 GCLC glutamate--cysteine ligase catalytic subunit compare
mRNA_4961 13329 +1.7 0.9 Hypothetical Protein compare
mRNA_1534 9902 +1.7 4.1 K12493 ARFGAP2_3 ADP-ribosylation factor GTPase-activating protein 2/3 compare
mRNA_1945 10313 +1.7 8.4 Hypothetical Protein compare
mRNA_3807 12175 +1.7 11.5 HMMPfam-Docking domain of Afi1 for Arf3 in vesicle trafficking-PF07792,HMMPfam-Stabilization of polarity axis-PF08616 compare
mRNA_5256 13624 +1.7 4.2 SUPERFAMILY--SSF53448 compare
mRNA_5548 13916 +1.6 4.2 KOG4006 Anti-proliferation factor BTG1/TOB compare
mRNA_6369 14737 +1.6 4.5 Hypothetical Protein compare
mRNA_6267 14635 +1.6 8.1 KOG1721 FOG Zn-finger compare
mRNA_6801 15169 +1.6 7.9 K15279 SLC35C1, FUCT1 solute carrier family 35 (GDP-fucose transporter), member C1 compare
mRNA_1129 9497 +1.6 3.6 K12391 AP1G1 AP-1 complex subunit gamma-1 compare
mRNA_6562 14930 +1.6 3.6 K20353 SEC16 COPII coat assembly protein SEC16 compare
mRNA_2003 10371 +1.6 8.5 KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif compare
mRNA_6463 14831 +1.6 1.7 K10427 DCTN5 dynactin 5 compare
mRNA_6793 15161 +1.6 10.6 KOG2375 Protein interacting with poly(A)-binding protein compare
mRNA_7510 15878 +1.6 9.2 K11644 SIN3A paired amphipathic helix protein Sin3a compare
mRNA_3285 11653 +1.5 4.1 KOG2069 Golgi transport complex subunit compare
mRNA_8226 16594 +1.5 3.4 KOG0849 Transcription factor PRD and related proteins, contain PAX and HOX domains compare
mRNA_2241 10609 +1.5 8.4 K12572 PAN3 PAB-dependent poly(A)-specific ribonuclease subunit 3 compare
mRNA_743 9111 +1.5 3.0 K08493 VTI1 vesicle transport through interaction with t-SNAREs 1 compare
mRNA_5048 13416 +1.5 2.2 HMMPfam-Animal haem peroxidase-PF03098,ProSiteProfiles-Animal heme peroxidase superfamily profile.-PS50292,SUPERFAMILY--SSF48113 compare
mRNA_3232 11600 +1.5 0.9 ProSiteProfiles-BRCT domain profile.-PS50172 compare
mRNA_1614 9982 +1.5 4.4 KOG2819 Uncharacterized conserved protein compare
mRNA_6839 15207 +1.5 10.3 K17257 ITFG1 integrin alpha FG-GAP repeat containing protein 1 compare
mRNA_4060 12428 +1.5 5.2 K01537 E3.6.3.8 Ca2+-transporting ATPase compare
mRNA_6819 15187 +1.5 4.8 SUPERFAMILY--SSF103107 compare
mRNA_8351 16719 +1.5 1.3 K14303 NUP160, NUP120 nuclear pore complex protein Nup160 compare
mRNA_7852 16220 +1.5 1.7 Hypothetical Protein compare
mRNA_6539 14907 +1.5 6.8 K19800 SCH9 serine/threonine protein kinase SCH9 compare
mRNA_3687 12055 +1.4 2.9 K14837 NOP12 nucleolar protein 12 compare
mRNA_109 8477 +1.4 1.6 Hypothetical Protein compare
mRNA_8043 16411 +1.4 5.3 K15283 SLC35E1 solute carrier family 35, member E1 compare
mRNA_2101 10469 +1.4 5.6 K12041 SLC9A6_7, NHE6_7 solute carrier family 9 (sodium/hydrogen exchanger), member 6/7 compare
mRNA_4514 12882 +1.4 3.6 K03241 EIF2B3 translation initiation factor eIF-2B subunit gamma compare
mRNA_1844 10212 +1.4 2.8 K16066 ydfG 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase compare
mRNA_602 8970 +1.4 3.5 K14642 YND1 golgi apyrase compare
mRNA_2378 10746 +1.4 2.8 Hypothetical Protein compare
mRNA_5988 14356 +1.4 8.3 K06111 EXOC4, SEC8 exocyst complex component 4 compare
mRNA_3931 12299 +1.4 5.8 BLAST protein [Lichtheimia corymbifera JMRC-FSU-9682] compare
mRNA_7125 15493 +1.4 4.7 K11315 TADA3, ADA3, NGG1 transcriptional adapter 3 compare
mRNA_2373 10741 +1.4 6.2 K08286 E2.7.11.- protein-serine/threonine kinase compare
mRNA_2505 10873 +1.4 3.4 KOG3299 Uncharacterized conserved protein compare
mRNA_6536 14904 +1.4 5.8 HMMPfam-Protein of unknown function (DUF837)-PF05769 compare
mRNA_624 8992 +1.4 2.8 K13886 CORO1B_1C_6 coronin-1B/1C/6 compare
mRNA_274 8642 +1.4 1.6 BLAST Putative Pc16g06240 protein [Torrubiella hemipterigena] compare
mRNA_1888 10256 +1.4 2.8 HMMPfam-Protein of unknown function (DUF2423)-PF10338 compare
mRNA_4013 12381 +1.4 0.8 HMMPfam-DJ-1/PfpI family-PF01965,HMMPfam-N-terminal domain of DJ-1_PfpI family-PF13587,SUPERFAMILY--SSF52317 compare
mRNA_5421 13789 +1.3 3.0 Interpro Domain of unknown function (DUF5102) 0 compare
mRNA_5145 13513 +1.3 8.5 Hypothetical Protein compare
mRNA_1615 9983 +1.3 1.3 K03283 HSPA1_8 heat shock 70kDa protein 1/8 compare
mRNA_2971 11339 +1.3 9.7 HMMPfam-Anp1-PF03452,SUPERFAMILY--SSF53448 compare
mRNA_6791 15159 +1.3 2.4 K00888 PI4KA phosphatidylinositol 4-kinase A compare
mRNA_8332 16700 +1.3 8.9 K10082 LMAN2, VIP36 lectin, mannose-binding 2 compare
mRNA_4302 12670 +1.3 7.3 K07819 B3GALT1 beta-1,3-galactosyltransferase 1 compare
mRNA_2358 10726 +1.3 0.5 Hypothetical Protein compare
mRNA_4280 12648 +1.3 7.8 HMMPfam-Actin interacting protein 3-PF03915,SMART-Actin interacting protein 3-SM00806 compare
mRNA_2364 10732 +1.3 3.0 K20471 COPD, ARCN1, RET2 coatomer subunit delta compare
mRNA_6506 14874 +1.3 4.4 KOG2712 Transcriptional coactivator compare
mRNA_7461 15829 +1.3 4.1 K08964 mtnB methylthioribulose-1-phosphate dehydratase compare
mRNA_3987 12355 +1.3 3.5 K08576 CAPN7 calpain-7 compare
mRNA_5550 13918 +1.3 1.6 K09424 REB1 Myb-like DNA-binding protein REB1 compare
mRNA_1873 10241 +1.3 8.1 BLAST Rab geranylgeranyltransferase [Mycena chlorophos] compare
mRNA_5555 13923 +1.3 2.4 K19984 EXOC5, SEC10 exocyst complex component 5 compare
mRNA_7674 16042 +1.3 1.6 SUPERFAMILY--SSF48371 compare
mRNA_5603 13971 +1.3 6.1 K09523 DNAJC3 DnaJ homolog subfamily C member 3 compare
mRNA_2244 10612 +1.3 2.0 KOG4120 G/T mismatch-specific thymine DNA glycosylase compare
mRNA_8394 16762 +1.3 5.5 KOG3680 Uncharacterized conserved protein compare
mRNA_2621 10989 +1.2 11.5 K01711 gmd, GMDS GDPmannose 4,6-dehydratase compare
mRNA_8366 16734 +1.2 2.7 BLAST similar to An01g09190 [Aspergillus kawachii IFO 4308] compare
mRNA_7474 15842 +1.2 9.9 HMMPfam-Glycosyl transferases group 1-PF00534,HMMPfam-Starch synthase catalytic domain-PF08323,SUPERFAMILY--SSF53756 compare
mRNA_5651 14019 +1.2 2.3 K13728 MAD2L2 mitotic spindle assembly checkpoint protein MAD2B compare
mRNA_8130 16498 +1.2 5.6 BLAST transcription factor [Pseudozyma hubeiensis SY62] compare
mRNA_5397 13765 +1.2 5.8 HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448 compare
mRNA_6411 14779 +1.2 1.5 BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M... compare
mRNA_8334 16702 +1.2 6.5 BLAST mtf1_muccl ame full transcription factor mtf1 [Licht... compare
mRNA_4101 12469 +1.2 1.6 Hypothetical Protein compare
mRNA_3473 11841 +1.2 7.9 K11578 ZW10, DSL1 protein transport protein DSL1/ZW10 compare
mRNA_4079 12447 +1.2 10.2 KOG2518 5'-3' exonuclease compare
mRNA_887 9255 +1.2 3.8 K04409 PAK1 p21-activated kinase 1 compare
mRNA_5234 13602 +1.2 2.3 KOG0725 Reductases with broad range of substrate specificities compare
mRNA_8151 16519 +1.2 9.7 K19846 SPA2 protein SPA2 compare
mRNA_7030 15398 +1.2 8.0 SUPERFAMILY--SSF50685 compare
mRNA_6489 14857 +1.2 9.2 KOG0327 Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases compare
mRNA_3305 11673 +1.2 0.5 KOG3299 Uncharacterized conserved protein compare
mRNA_1367 9735 +1.2 3.6 K03233 EEF1G elongation factor 1-gamma compare
mRNA_6487 14855 +1.2 6.5 K11237 BEM1 bud emergence protein 1 compare
mRNA_2549 10917 +1.2 1.5 HMMPfam-Chromatin modification-related protein EAF7-PF07904 compare
mRNA_1261 9629 +1.2 1.0 K04712 DEGS sphingolipid Delta-4 desaturase compare
mRNA_1415 9783 +1.2 7.0 Hypothetical Protein compare
mRNA_1911 10279 +1.2 3.4 K14967 BRE2, CPS60 COMPASS component BRE2 compare
mRNA_7737 16105 +1.2 1.9 HMMPfam-Antibiotic biosynthesis monooxygenase-PF03992,SUPERFAMILY--SSF54909 compare
mRNA_8237 16605 +1.2 5.9 K04345 PKA protein kinase A compare
mRNA_6743 15111 +1.2 3.0 K06671 STAG1_2, SCC3, IRR1 cohesin complex subunit SA-1/2 compare
mRNA_5126 13494 +1.2 2.9 Hypothetical Protein compare
mRNA_2592 10960 +1.2 1.0 HMMPfam-Protein of unknown function (DUF1762)-PF08574 compare
mRNA_1965 10333 +1.1 4.0 K11422 SETD1, SET1 histone-lysine N-methyltransferase SETD1 compare
mRNA_2319 10687 +1.1 2.9 KOG3872 FOG FHA domain compare
mRNA_2915 11283 +1.1 3.4 Hypothetical Protein compare
mRNA_3439 11807 +1.1 2.4 KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins compare
mRNA_7383 15751 +1.1 5.5 K19355 MAN mannan endo-1,4-beta-mannosidase compare
mRNA_4595 12963 +1.1 0.3 KOG2186 Cell growth-regulating nucleolar protein compare
mRNA_4493 12861 +1.1 2.4 SUPERFAMILY--SSF52047 compare
mRNA_2386 10754 +1.1 5.1 K01530 E3.6.3.1 phospholipid-translocating ATPase compare
mRNA_3890 12258 +1.1 6.1 HMMPfam-Pal1 cell morphology protein-PF08316 compare
mRNA_6439 14807 +1.1 4.4 Hypothetical Protein compare
mRNA_5134 13502 +1.1 2.7 Hypothetical Protein compare
mRNA_8214 16582 +1.1 0.9 BLAST NADH-ubiquinone oxidoreductase 9.5 kDa subunit [R... compare
mRNA_3012 11380 +1.1 7.0 K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit compare
mRNA_2412 10780 +1.1 4.5 K04378 SRF serum response factor compare
mRNA_5363 13731 +1.1 0.5 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_6296 14664 +1.1 3.2 Hypothetical Protein compare
mRNA_4526 12894 +1.1 5.7 K12446 E2.7.1.46 L-arabinokinase compare
mRNA_4312 12680 +1.1 7.9 K14802 DRS2, ATP8A phospholipid-transporting ATPase compare
mRNA_4321 12689 +1.1 7.1 K14960 CXXC1, SPP1, CPS40 COMPASS component SPP1 compare
mRNA_5370 13738 +1.1 1.5 K18443 GBF1 golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 compare
mRNA_7044 15412 +1.1 5.3 KOG4299 PHD Zn-finger protein compare
mRNA_4292 12660 +1.1 1.9 HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899 compare
mRNA_2995 11363 +1.1 6.9 K20290 COG3, SEC34 conserved oligomeric Golgi complex subunit 3 compare
mRNA_7083 15451 +1.1 1.9 K18803 HPM1 protein-histidine N-methyltransferase compare
mRNA_7656 16024 +1.1 1.5 Hypothetical Protein compare
mRNA_7536 15904 +1.1 2.6 KOG2216 Conserved coiled/coiled coil protein compare
mRNA_5366 13734 +1.1 4.1 KOG1752 Glutaredoxin and related proteins compare
mRNA_2392 10760 +1.1 3.1 K10364 CAPZA capping protein (actin filament) muscle Z-line, alpha compare
mRNA_5093 13461 +1.1 1.9 Hypothetical Protein compare
mRNA_2438 10806 +1.1 1.1 HMMPfam-Predicted coiled-coil protein (DUF2205)-PF10224 compare
mRNA_1260 9628 +1.1 10.0 Hypothetical Protein compare
mRNA_7818 16186 +1.1 2.1 K10865 MRE11 double-strand break repair protein MRE11 compare
mRNA_5652 14020 +1.1 1.8 KOG4443 Putative transcription factor HALR/MLL3, involved in embryonic development compare
mRNA_240 8608 +1.1 3.1 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_7396 15764 +1.1 1.3 K18584 ACTR3, ARP3 actin-related protein 3 compare
mRNA_4874 13242 +1.1 0.8 KOG2922 Uncharacterized conserved protein compare
mRNA_6485 14853 +1.1 2.4 K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase compare
mRNA_953 9321 +1.0 1.9 Hypothetical Protein compare
mRNA_5734 14102 +1.0 0.7 K01183 E3.2.1.14 chitinase compare
mRNA_2721 11089 +1.0 4.9 BLAST metallophosphoesterase domain-containing protein [Muc... compare
mRNA_6049 14417 +1.0 4.8 K08517 SEC22 vesicle transport protein SEC22 compare
mRNA_7587 15955 +1.0 6.0 HMMPfam-Protein of unknown function (DUF2413)-PF10310 compare
mRNA_6794 15162 +1.0 3.2 K10773 NTH endonuclease III compare
mRNA_7229 15597 +1.0 0.9 Hypothetical Protein compare
mRNA_2936 11304 +1.0 3.0 Hypothetical Protein compare
mRNA_1450 9818 +1.0 1.5 K20826 RPAP1 RNA polymerase II-associated protein 1 compare
mRNA_8232 16600 +1.0 3.0 K12623 LSM4 U6 snRNA-associated Sm-like protein LSm4 compare
mRNA_4919 13287 +1.0 7.5 K01768 E4.6.1.1 adenylate cyclase compare
mRNA_259 8627 +1.0 3.4 HMMPfam-Domain of unknown function (DUF1771)-PF08590,ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103,ProSiteProfiles-Smr domain profile.-PS50828,SMART-zinc finger-SM00356 compare
mRNA_4419 12787 +1.0 2.3 K11121 SIR2 NAD-dependent histone deacetylase SIR2 compare
mRNA_5155 13523 +1.0 3.1 BLAST unknown [Tremella fuciformis] compare
mRNA_4381 12749 +1.0 5.9 BLAST glycosyltransferase family 25 [Puccinia cf. psidii AE... compare
mRNA_3816 12184 +1.0 10.1 KOG3613 Dopey and related predicted leucine zipper transcription factors compare
mRNA_4917 13285 +1.0 1.5 KOG2920 Predicted methyltransferase compare
mRNA_6846 15214 +1.0 1.3 K02603 ORC1 origin recognition complex subunit 1 compare
mRNA_756 9124 +1.0 2.3 HMMPfam-Protein of unknown function (DUF3074)-PF11274,SUPERFAMILY--SSF55961 compare
mRNA_2034 10402 +1.0 2.4 HMMPfam-Spherulation-specific family 4-PF12138 compare
mRNA_5617 13985 +1.0 3.2 BLAST beta-flanking protein [Kwoniella dejecticola CBS ... compare
mRNA_7156 15524 +1.0 4.0 K20102 YTHDF YTH domain-containing family protein compare
mRNA_2009 10377 +1.0 2.9 BLAST ankyrin [Cenococcum geophilum 1.58] compare
mRNA_3585 11953 +1.0 1.3 KOG1339 Aspartyl protease compare
mRNA_5935 14303 +1.0 1.2 HMMPfam-Homeobox KN domain-PF05920,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SUPERFAMILY--SSF46689 compare
mRNA_3773 12141 +1.0 4.2 BLAST transmembrane protein, putative [Rhizoctonia solani A... compare
mRNA_1085 9453 +1.0 1.7 Hypothetical Protein compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in growth on ricinoleic acid experiments

For growth on ricinoleic acid YNB Methylricinoleic Acid across organisms