Experiment setARA_RA for Rhodosporidium toruloides IFO0880

Compare to:

YNB Ricinoleic Acid

200 most detrimental genes:

  gene name fitness t score description  
mRNA_1755 10123 +4.4 22.2 K00326 E1.6.2.2 cytochrome-b5 reductase compare
mRNA_699 9067 +3.9 10.5 K20289 COG2 conserved oligomeric Golgi complex subunit 2 compare
mRNA_3729 12097 +3.8 10.7 K15280 SLC35C2 solute carrier family 35, member C2 compare
mRNA_2796 11164 +3.5 1.9 K08286 E2.7.11.- protein-serine/threonine kinase compare
mRNA_4878 13246 +3.4 20.0 K04348 PPP3C, CNA serine/threonine-protein phosphatase 2B catalytic subunit compare
mRNA_3307 11675 +3.4 19.0 K06268 PPP3R, CNB serine/threonine-protein phosphatase 2B regulatory subunit compare
mRNA_2270 10638 +3.3 13.3 K19833 CLA4 serine/threonine-protein kinase CLA4 compare
mRNA_6553 14921 +3.3 13.0 SUPERFAMILY--SSF52266 compare
mRNA_5720 14088 +3.2 16.1 K04392 RAC1 Ras-related C3 botulinum toxin substrate 1 compare
mRNA_1934 10302 +3.1 14.1 HMMPfam-Cryptococcal mannosyltransferase 1-PF11735 compare
mRNA_8230 16598 +3.0 12.4 K09668 LARGE glycosyltransferase-like protein LARGE compare
mRNA_7515 15883 +3.0 24.9 K07827 KRAS, KRAS2 GTPase KRas compare
mRNA_1677 10045 +3.0 17.6 K15620 GOLPH3, GPP34 golgi phosphoprotein 3 compare
mRNA_2189 10557 +2.9 6.8 K11236 CDC24 cell division control protein 24 compare
mRNA_6819 15187 +2.9 8.4 SUPERFAMILY--SSF103107 compare
mRNA_5144 13512 +2.7 6.1 BLAST putative mit domain-containing protein [Erysiphe neca... compare
mRNA_4866 13234 +2.7 2.6 KOG2881 Predicted membrane protein compare
mRNA_1134 9502 +2.5 3.7 K10685 UBLE1B, SAE2, UBA2 ubiquitin-like 1-activating enzyme E1 B compare
mRNA_3302 11670 +2.5 6.7 K07232 chaC cation transport protein ChaC compare
mRNA_6883 15251 +2.4 11.7 BLAST similar to An03g02750 [Aspergillus kawachii IFO 4308] compare
mRNA_6801 15169 +2.3 11.1 K15279 SLC35C1, FUCT1 solute carrier family 35 (GDP-fucose transporter), member C1 compare
mRNA_7071 15439 +2.3 3.6 BLAST histone H3 h3.1 [Schizosaccharomyces japonicus yF... compare
mRNA_7833 16201 +2.2 8.5 HMMPfam-Cryptococcal mannosyltransferase 1-PF11735 compare
mRNA_811 9179 +2.2 5.0 Interpro Glycosyl-transferase for dystroglycan compare
mRNA_5548 13916 +2.1 5.1 KOG4006 Anti-proliferation factor BTG1/TOB compare
mRNA_1614 9982 +2.1 5.2 KOG2819 Uncharacterized conserved protein compare
mRNA_33 8401 +2.1 10.1 HMMPfam-Myosin-binding striated muscle assembly central-PF11701,SUPERFAMILY--SSF48371 compare
mRNA_1534 9902 +2.1 5.6 K12493 ARFGAP2_3 ADP-ribosylation factor GTPase-activating protein 2/3 compare
mRNA_2876 11244 +2.1 2.7 K18715 NUP159 nucleoporin NUP159 compare
mRNA_1000 9368 +2.1 8.0 BLAST glycosyltransferase 2 [Moniliophthora roreri MCA ... compare
mRNA_8193 16561 +2.1 1.9 Hypothetical Protein compare
mRNA_2131 10499 +2.1 3.9 K09580 PDIA1, P4HB protein disulfide-isomerase A1 compare
mRNA_4874 13242 +2.0 1.8 KOG2922 Uncharacterized conserved protein compare
mRNA_3807 12175 +2.0 14.0 HMMPfam-Docking domain of Afi1 for Arf3 in vesicle trafficking-PF07792,HMMPfam-Stabilization of polarity axis-PF08616 compare
mRNA_3753 12121 +2.0 14.2 K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase compare
mRNA_5540 13908 +2.0 11.4 Interpro GDP-fucose protein O-fucosyltransferase compare
mRNA_6562 14930 +2.0 3.9 K20353 SEC16 COPII coat assembly protein SEC16 compare
mRNA_2056 10424 +2.0 4.3 K11667 INO80C, IES6 INO80 complex subunit C compare
mRNA_6958 15326 +1.9 6.9 K09238 ACE2 metallothionein expression activator compare
mRNA_602 8970 +1.9 4.3 K14642 YND1 golgi apyrase compare
mRNA_6513 14881 +1.9 12.4 HMMPfam-Glycosyl transferase family 90-PF05686,SMART-Putative lipopolysaccharide-modifying enzyme.-SM00672 compare
mRNA_6272 14640 +1.9 4.6 KOG4679 Uncharacterized protein PSP1 (suppressor of DNA polymerase alpha mutations in yeast) compare
mRNA_6539 14907 +1.9 7.4 K19800 SCH9 serine/threonine protein kinase SCH9 compare
mRNA_6506 14874 +1.8 5.2 KOG2712 Transcriptional coactivator compare
mRNA_5102 13470 +1.8 11.2 KOG0619 FOG Leucine rich repeat compare
mRNA_7818 16186 +1.8 2.7 K10865 MRE11 double-strand break repair protein MRE11 compare
mRNA_5145 13513 +1.8 10.2 Hypothetical Protein compare
mRNA_109 8477 +1.8 1.9 Hypothetical Protein compare
mRNA_1946 10314 +1.8 6.0 KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif compare
mRNA_1888 10256 +1.7 3.3 HMMPfam-Protein of unknown function (DUF2423)-PF10338 compare
mRNA_2944 11312 +1.7 4.3 BLAST Putative CigA protein [Rhizopus microsporus] compare
mRNA_1314 9682 +1.7 3.3 BLAST carboxymethylenebutenolidase [Rhizoctonia solani AG-1... compare
mRNA_2227 10595 +1.7 1.2 K12392 AP1B1 AP-1 complex subunit beta-1 compare
mRNA_5652 14020 +1.7 2.3 KOG4443 Putative transcription factor HALR/MLL3, involved in embryonic development compare
mRNA_5234 13602 +1.7 3.3 KOG0725 Reductases with broad range of substrate specificities compare
mRNA_2621 10989 +1.7 14.9 K01711 gmd, GMDS GDPmannose 4,6-dehydratase compare
mRNA_4968 13336 +1.7 7.4 KOG4464 Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) compare
mRNA_4955 13323 +1.7 1.4 K20306 TRAPPC9, TRS120 trafficking protein particle complex subunit 9 compare
mRNA_2358 10726 +1.6 0.7 Hypothetical Protein compare
mRNA_427 8795 +1.6 1.6 Hypothetical Protein compare
mRNA_4079 12447 +1.6 13.7 KOG2518 5'-3' exonuclease compare
mRNA_6536 14904 +1.6 6.2 HMMPfam-Protein of unknown function (DUF837)-PF05769 compare
mRNA_3285 11653 +1.6 3.9 KOG2069 Golgi transport complex subunit compare
mRNA_4321 12689 +1.6 8.7 K14960 CXXC1, SPP1, CPS40 COMPASS component SPP1 compare
mRNA_5988 14356 +1.6 7.8 K06111 EXOC4, SEC8 exocyst complex component 4 compare
mRNA_3254 11622 +1.6 0.5 K12161 URM1 ubiquitin related modifier 1 compare
mRNA_6489 14857 +1.6 10.9 KOG0327 Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases compare
mRNA_3931 12299 +1.6 6.6 BLAST protein [Lichtheimia corymbifera JMRC-FSU-9682] compare
mRNA_5603 13971 +1.5 6.8 K09523 DNAJC3 DnaJ homolog subfamily C member 3 compare
mRNA_5126 13494 +1.5 3.6 Hypothetical Protein compare
mRNA_5256 13624 +1.5 3.6 SUPERFAMILY--SSF53448 compare
mRNA_2378 10746 +1.5 3.3 Hypothetical Protein compare
mRNA_8366 16734 +1.5 4.0 BLAST similar to An01g09190 [Aspergillus kawachii IFO 4308] compare
mRNA_3789 12157 +1.5 4.1 K09584 PDIA6, TXNDC7 protein disulfide-isomerase A6 compare
mRNA_2003 10371 +1.5 8.3 KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif compare
mRNA_743 9111 +1.5 1.9 K08493 VTI1 vesicle transport through interaction with t-SNAREs 1 compare
mRNA_2373 10741 +1.5 6.0 K08286 E2.7.11.- protein-serine/threonine kinase compare
mRNA_6793 15161 +1.5 8.5 KOG2375 Protein interacting with poly(A)-binding protein compare
mRNA_443 8811 +1.5 2.7 KOG2742 Predicted oxidoreductase compare
mRNA_3532 11900 +1.4 11.8 K00670 NAA30, MAK3 N-alpha-acetyltransferase 30 compare
mRNA_5125 13493 +1.4 3.9 Interpro Protein of unknown function (DUF3431) compare
mRNA_3245 11613 +1.4 5.1 HMMPfam-Fungal protein of unknown function (DUF1752)-PF08550,HMMPfam-Protein of unknown function (DUF3295)-PF11702 compare
mRNA_1844 10212 +1.4 3.1 K16066 ydfG 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase compare
mRNA_8043 16411 +1.4 4.9 K15283 SLC35E1 solute carrier family 35, member E1 compare
mRNA_4514 12882 +1.4 3.7 K03241 EIF2B3 translation initiation factor eIF-2B subunit gamma compare
mRNA_999 9367 +1.4 3.7 HMMPfam-PAPA-1-like conserved region-PF04795 compare
mRNA_1726 10094 +1.4 5.1 BLAST Protein priA [Grifola frondosa] compare
mRNA_3232 11600 +1.4 0.8 ProSiteProfiles-BRCT domain profile.-PS50172 compare
mRNA_5155 13523 +1.4 4.5 BLAST unknown [Tremella fuciformis] compare
mRNA_1965 10333 +1.4 3.6 K11422 SETD1, SET1 histone-lysine N-methyltransferase SETD1 compare
mRNA_2364 10732 +1.4 3.0 K20471 COPD, ARCN1, RET2 coatomer subunit delta compare
mRNA_1945 10313 +1.4 5.8 Hypothetical Protein compare
mRNA_1806 10174 +1.4 2.2 BLAST related to C2H2 zinc finger protein [Ustilago hordei] compare
mRNA_8490 16858 +1.4 15.2 ProSitePatterns-Zinc finger PHD-type signature.-PS01359,ProSiteProfiles-Zinc finger PHD-type profile.-PS50016,SMART-PHD zinc finger-SM00249,SUPERFAMILY--SSF57903 compare
mRNA_2915 11283 +1.4 3.2 Hypothetical Protein compare
mRNA_7125 15493 +1.4 2.9 K11315 TADA3, ADA3, NGG1 transcriptional adapter 3 compare
mRNA_887 9255 +1.4 4.4 K04409 PAK1 p21-activated kinase 1 compare
mRNA_3687 12055 +1.4 2.3 K14837 NOP12 nucleolar protein 12 compare
mRNA_1725 10093 +1.3 12.2 KOG2343 Glucose-repressible protein and related proteins compare
mRNA_1215 9583 +1.3 1.3 Hypothetical Protein compare
mRNA_1615 9983 +1.3 1.4 K03283 HSPA1_8 heat shock 70kDa protein 1/8 compare
mRNA_8237 16605 +1.3 5.8 K04345 PKA protein kinase A compare
mRNA_1741 10109 +1.3 4.1 HMMPfam-Calcipressin-PF04847 compare
mRNA_8276 16644 +1.3 11.4 K06630 YWHAE 14-3-3 protein epsilon compare
mRNA_2566 10934 +1.3 4.4 KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) compare
mRNA_6463 14831 +1.3 1.3 K10427 DCTN5 dynactin 5 compare
mRNA_1031 9399 +1.3 2.3 Hypothetical Protein compare
mRNA_386 8754 +1.3 2.7 Hypothetical Protein compare
mRNA_5397 13765 +1.3 6.3 HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448 compare
mRNA_2437 10805 +1.3 6.1 Hypothetical Protein compare
mRNA_1538 9906 +1.3 1.7 K20307 TRAPPC10, TRS130 trafficking protein particle complex subunit 10 compare
mRNA_1911 10279 +1.3 3.6 K14967 BRE2, CPS60 COMPASS component BRE2 compare
mRNA_8151 16519 +1.3 11.6 K19846 SPA2 protein SPA2 compare
mRNA_6202 14570 +1.3 8.0 KOG4475 FOG Immunoglobin and related proteins compare
mRNA_942 9310 +1.3 3.2 KOG1743 Ferric reductase-like proteins compare
mRNA_4280 12648 +1.3 7.0 HMMPfam-Actin interacting protein 3-PF03915,SMART-Actin interacting protein 3-SM00806 compare
mRNA_7583 15951 +1.3 2.1 HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713 compare
mRNA_1461 9829 +1.3 3.7 K02503 HINT1, hinT, hit histidine triad (HIT) family protein compare
mRNA_5874 14242 +1.3 4.4 K04536 GNB1 guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 compare
mRNA_2478 10846 +1.3 5.1 K20293 COG6, COD2 conserved oligomeric Golgi complex subunit 6 compare
mRNA_5594 13962 +1.3 2.0 K07943 ARL2 ADP-ribosylation factor-like protein 2 compare
mRNA_2741 11109 +1.2 1.8 HMMPfam-Telomeric single stranded DNA binding POT1/CDC13-PF02765,SUPERFAMILY--SSF50249 compare
mRNA_2009 10377 +1.2 3.6 BLAST ankyrin [Cenococcum geophilum 1.58] compare
mRNA_4802 13170 +1.2 7.2 K09313 CUTL homeobox protein cut-like compare
mRNA_1435 9803 +1.2 1.7 Hypothetical Protein compare
mRNA_756 9124 +1.2 2.5 HMMPfam-Protein of unknown function (DUF3074)-PF11274,SUPERFAMILY--SSF55961 compare
mRNA_7030 15398 +1.2 6.7 SUPERFAMILY--SSF50685 compare
mRNA_3597 11965 +1.2 1.5 K15562 BUR1, SGV1 serine/threonine-protein kinase BUR1 compare
mRNA_4060 12428 +1.2 4.4 K01537 E3.6.3.8 Ca2+-transporting ATPase compare
mRNA_259 8627 +1.2 3.8 HMMPfam-Domain of unknown function (DUF1771)-PF08590,ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103,ProSiteProfiles-Smr domain profile.-PS50828,SMART-zinc finger-SM00356 compare
mRNA_5048 13416 +1.2 1.6 HMMPfam-Animal haem peroxidase-PF03098,ProSiteProfiles-Animal heme peroxidase superfamily profile.-PS50292,SUPERFAMILY--SSF48113 compare
mRNA_4919 13287 +1.2 8.7 K01768 E4.6.1.1 adenylate cyclase compare
mRNA_4526 12894 +1.2 5.9 K12446 E2.7.1.46 L-arabinokinase compare
mRNA_3770 12138 +1.2 3.4 K12606 RCD1, CNOT9, CAF40 CCR4-NOT transcription complex subunit 9 compare
mRNA_5151 13519 +1.2 4.8 HMMPfam-SUR7/PalI family-PF06687 compare
mRNA_2721 11089 +1.2 5.6 BLAST metallophosphoesterase domain-containing protein [Muc... compare
mRNA_1401 9769 +1.2 2.1 Hypothetical Protein compare
mRNA_5555 13923 +1.2 2.3 K19984 EXOC5, SEC10 exocyst complex component 5 compare
mRNA_4013 12381 +1.2 0.7 HMMPfam-DJ-1/PfpI family-PF01965,HMMPfam-N-terminal domain of DJ-1_PfpI family-PF13587,SUPERFAMILY--SSF52317 compare
mRNA_5386 13754 +1.2 1.4 Hypothetical Protein compare
mRNA_2971 11339 +1.2 7.8 HMMPfam-Anp1-PF03452,SUPERFAMILY--SSF53448 compare
mRNA_5141 13509 +1.2 2.0 K12198 CHMP5, VPS60 charged multivesicular body protein 5 compare
mRNA_3473 11841 +1.2 8.0 K11578 ZW10, DSL1 protein transport protein DSL1/ZW10 compare
mRNA_7019 15387 +1.2 3.4 K13212 LUC7L2 RNA-binding protein Luc7-like 2 compare
mRNA_6538 14906 +1.2 7.7 BLAST AGC/AKT protein kinase [Microbotryum lychnidis-dioica... compare
mRNA_7474 15842 +1.2 8.3 HMMPfam-Glycosyl transferases group 1-PF00534,HMMPfam-Starch synthase catalytic domain-PF08323,SUPERFAMILY--SSF53756 compare
mRNA_2034 10402 +1.2 2.0 HMMPfam-Spherulation-specific family 4-PF12138 compare
mRNA_6195 14563 +1.2 1.7 SUPERFAMILY--SSF52047 compare
mRNA_5805 14173 +1.2 2.8 HMMPfam-Ion transport protein-PF00520,SUPERFAMILY--SSF81324 compare
mRNA_4390 12758 +1.1 2.8 K16261 YAT yeast amino acid transporter compare
mRNA_7510 15878 +1.1 7.9 K11644 SIN3A paired amphipathic helix protein Sin3a compare
mRNA_7587 15955 +1.1 5.9 HMMPfam-Protein of unknown function (DUF2413)-PF10310 compare
mRNA_4595 12963 +1.1 -0.2 KOG2186 Cell growth-regulating nucleolar protein compare
mRNA_7656 16024 +1.1 1.2 Hypothetical Protein compare
mRNA_8332 16700 +1.1 5.1 K10082 LMAN2, VIP36 lectin, mannose-binding 2 compare
mRNA_4547 12915 +1.1 1.7 ProSiteProfiles-SET domain profile.-PS50280,SUPERFAMILY--SSF82199 compare
mRNA_227 8595 +1.1 5.1 K03259 EIF4E translation initiation factor 4E compare
mRNA_6415 14783 +1.1 1.6 Hypothetical Protein compare
mRNA_7790 16158 +1.1 1.1 Hypothetical Protein compare
mRNA_8334 16702 +1.1 5.8 BLAST mtf1_muccl ame full transcription factor mtf1 [Licht... compare
mRNA_447 8815 +1.1 5.2 BLAST protein of unknown function [Taphrina deformans PYCC ... compare
mRNA_1126 9494 +1.1 3.3 K15334 NCL1, TRM4 multisite-specific tRNA-(cytosine-C5)-methyltransferase compare
mRNA_4730 13098 +1.1 1.9 K06062 PCAF, KAT2, GCN5 histone acetyltransferase compare
mRNA_2048 10416 +1.1 2.5 Hypothetical Protein compare
mRNA_1692 10060 +1.1 6.2 K20292 COG5 conserved oligomeric Golgi complex subunit 5 compare
mRNA_7346 15714 +1.1 2.1 Hypothetical Protein compare
mRNA_6321 14689 +1.1 6.3 Hypothetical Protein compare
mRNA_2936 11304 +1.1 3.7 Hypothetical Protein compare
mRNA_205 8573 +1.1 1.8 KOG4267 Predicted membrane protein compare
mRNA_371 8739 +1.1 5.5 HMMPfam-Protein of unknown function (DUF2408)-PF10303 compare
mRNA_2585 10953 +1.1 1.2 K18167 SDHAF1 succinate dehydrogenase assembly factor 1 compare
mRNA_7924 16292 +1.0 1.6 Hypothetical Protein compare
mRNA_7383 15751 +1.0 6.0 K19355 MAN mannan endo-1,4-beta-mannosidase compare
mRNA_7730 16098 +1.0 1.8 Hypothetical Protein compare
mRNA_6269 14637 +1.0 2.6 KOG1336 Monodehydroascorbate/ferredoxin reductase compare
mRNA_2707 11075 +1.0 5.1 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_8159 16527 +1.0 3.3 K17607 TIPRL, TIP41 type 2A phosphatase activator TIP41 compare
mRNA_1003 9371 +1.0 6.9 HMMPfam-Protein of unknown function (DUF2841)-PF11001 compare
mRNA_6322 14690 +1.0 4.9 K09420 MYB myb proto-oncogene protein compare
mRNA_6487 14855 +1.0 5.2 K11237 BEM1 bud emergence protein 1 compare
mRNA_8226 16594 +1.0 2.0 KOG0849 Transcription factor PRD and related proteins, contain PAX and HOX domains compare
mRNA_3736 12104 +1.0 1.4 K00573 E2.1.1.77, pcm protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
mRNA_6550 14918 +1.0 3.1 K11374 ELP2 elongator complex protein 2 compare
mRNA_3666 12034 +1.0 1.9 K16055 TPS trehalose 6-phosphate synthase/phosphatase compare
mRNA_7200 15568 +1.0 2.0 K14816 REI1 pre-60S factor REI1 compare
mRNA_483 8851 +1.0 4.4 KOG1339 Aspartyl protease compare
mRNA_2505 10873 +1.0 1.8 KOG3299 Uncharacterized conserved protein compare
mRNA_6267 14635 +1.0 4.3 KOG1721 FOG Zn-finger compare
mRNA_6612 14980 +1.0 3.6 Hypothetical Protein compare
mRNA_2578 10946 +1.0 5.4 KOG3574 Acetyl-CoA transporter compare
mRNA_2248 10616 +1.0 2.9 K01338 lon ATP-dependent Lon protease compare
mRNA_1129 9497 +1.0 2.2 K12391 AP1G1 AP-1 complex subunit gamma-1 compare
mRNA_1415 9783 +1.0 4.2 Hypothetical Protein compare
mRNA_2520 10888 +1.0 4.7 KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter compare
mRNA_1873 10241 +1.0 5.6 BLAST Rab geranylgeranyltransferase [Mycena chlorophos] compare
mRNA_8351 16719 +1.0 0.7 K14303 NUP160, NUP120 nuclear pore complex protein Nup160 compare
mRNA_2101 10469 +1.0 3.6 K12041 SLC9A6_7, NHE6_7 solute carrier family 9 (sodium/hydrogen exchanger), member 6/7 compare
mRNA_274 8642 +1.0 1.4 BLAST Putative Pc16g06240 protein [Torrubiella hemipterigena] compare
mRNA_2372 10740 +1.0 2.0 Hypothetical Protein compare
mRNA_2656 11024 +1.0 7.6 KOG3417 Ras1 guanine nucleotide exchange factor compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in growth on ricinoleic acid experiments

For growth on ricinoleic acid YNB Ricinoleic Acid across organisms