Experiment setARA_YNB_Gluc for Rhodosporidium toruloides IFO0880

Compare to:

YNB Glucose

200 most detrimental genes:

  gene name fitness t score description  
mRNA_2796 11164 +2.8 1.7 K08286 E2.7.11.- protein-serine/threonine kinase compare
mRNA_699 9067 +2.4 6.9 K20289 COG2 conserved oligomeric Golgi complex subunit 2 compare
mRNA_3307 11675 +2.3 16.1 K06268 PPP3R, CNB serine/threonine-protein phosphatase 2B regulatory subunit compare
mRNA_1755 10123 +2.3 13.8 K00326 E1.6.2.2 cytochrome-b5 reductase compare
mRNA_4878 13246 +2.2 14.7 K04348 PPP3C, CNA serine/threonine-protein phosphatase 2B catalytic subunit compare
mRNA_3729 12097 +2.1 5.5 K15280 SLC35C2 solute carrier family 35, member C2 compare
mRNA_6553 14921 +2.0 7.9 SUPERFAMILY--SSF52266 compare
mRNA_4595 12963 +1.9 1.3 KOG2186 Cell growth-regulating nucleolar protein compare
mRNA_1677 10045 +1.9 13.1 K15620 GOLPH3, GPP34 golgi phosphoprotein 3 compare
mRNA_3232 11600 +1.8 1.3 ProSiteProfiles-BRCT domain profile.-PS50172 compare
mRNA_6463 14831 +1.8 1.9 K10427 DCTN5 dynactin 5 compare
mRNA_3639 12007 +1.7 0.8 K11204 GCLC glutamate--cysteine ligase catalytic subunit compare
mRNA_5363 13731 +1.7 1.1 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_6539 14907 +1.6 7.9 K19800 SCH9 serine/threonine protein kinase SCH9 compare
mRNA_5651 14019 +1.6 3.1 K13728 MAD2L2 mitotic spindle assembly checkpoint protein MAD2B compare
mRNA_2270 10638 +1.6 7.6 K19833 CLA4 serine/threonine-protein kinase CLA4 compare
mRNA_5720 14088 +1.5 8.0 K04392 RAC1 Ras-related C3 botulinum toxin substrate 1 compare
mRNA_5688 14056 +1.5 2.0 K12199 VTA1, LIP5 vacuolar protein sorting-associated protein VTA1 compare
mRNA_2358 10726 +1.5 0.6 Hypothetical Protein compare
mRNA_6791 15159 +1.4 1.9 K00888 PI4KA phosphatidylinositol 4-kinase A compare
mRNA_1888 10256 +1.4 2.5 HMMPfam-Protein of unknown function (DUF2423)-PF10338 compare
mRNA_1934 10302 +1.4 7.7 HMMPfam-Cryptococcal mannosyltransferase 1-PF11735 compare
mRNA_4961 13329 +1.4 0.7 Hypothetical Protein compare
mRNA_4874 13242 +1.4 1.4 KOG2922 Uncharacterized conserved protein compare
mRNA_624 8992 +1.4 3.0 K13886 CORO1B_1C_6 coronin-1B/1C/6 compare
mRNA_5370 13738 +1.3 1.9 K18443 GBF1 golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 compare
mRNA_5126 13494 +1.3 3.1 Hypothetical Protein compare
mRNA_2372 10740 +1.3 3.4 Hypothetical Protein compare
mRNA_2378 10746 +1.3 2.9 Hypothetical Protein compare
mRNA_1654 10022 +1.3 0.6 BLAST expressed protein [Cryptococcus neoformans var. neofo... compare
mRNA_2876 11244 +1.3 2.2 K18715 NUP159 nucleoporin NUP159 compare
mRNA_1401 9769 +1.3 2.3 Hypothetical Protein compare
mRNA_3753 12121 +1.3 8.2 K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase compare
mRNA_1314 9682 +1.2 2.9 BLAST carboxymethylenebutenolidase [Rhizoctonia solani AG-1... compare
mRNA_5652 14020 +1.2 1.9 KOG4443 Putative transcription factor HALR/MLL3, involved in embryonic development compare
mRNA_5048 13416 +1.2 2.3 HMMPfam-Animal haem peroxidase-PF03098,ProSiteProfiles-Animal heme peroxidase superfamily profile.-PS50292,SUPERFAMILY--SSF48113 compare
mRNA_8363 16731 +1.2 3.7 KOG1693 emp24/gp25L/p24 family of membrane trafficking proteins compare
mRNA_5234 13602 +1.2 2.5 KOG0725 Reductases with broad range of substrate specificities compare
mRNA_4955 13323 +1.2 1.3 K20306 TRAPPC9, TRS120 trafficking protein particle complex subunit 9 compare
mRNA_274 8642 +1.2 1.6 BLAST Putative Pc16g06240 protein [Torrubiella hemipterigena] compare
mRNA_5421 13789 +1.2 3.0 Interpro Domain of unknown function (DUF5102) 0 compare
mRNA_7515 15883 +1.2 12.4 K07827 KRAS, KRAS2 GTPase KRas compare
mRNA_3439 11807 +1.2 3.4 KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins compare
mRNA_427 8795 +1.2 1.1 Hypothetical Protein compare
mRNA_7551 15919 +1.2 6.3 KOG1032 Uncharacterized conserved protein, contains GRAM domain compare
mRNA_7833 16201 +1.2 6.7 HMMPfam-Cryptococcal mannosyltransferase 1-PF11735 compare
mRNA_6958 15326 +1.2 4.1 K09238 ACE2 metallothionein expression activator compare
mRNA_4866 13234 +1.2 0.9 KOG2881 Predicted membrane protein compare
mRNA_7441 15809 +1.2 0.2 K08884 K08884 serine/threonine protein kinase, bacterial compare
mRNA_6474 14842 +1.2 2.8 HMMPfam-Vitamin-D-receptor interacting Mediator subunit 4-PF10018 compare
mRNA_1393 9761 +1.2 0.7 Hypothetical Protein compare
mRNA_6195 14563 +1.2 2.3 SUPERFAMILY--SSF52047 compare
mRNA_7901 16269 +1.2 1.5 KOG1605 TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) compare
mRNA_4968 13336 +1.2 4.6 KOG4464 Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) compare
mRNA_2784 11152 +1.1 8.4 K20241 WDR44, RAB11BP WD repeat-containing protein 44 compare
mRNA_1829 10197 +1.1 2.6 K20238 E2.1.1.317 sphingolipid C9-methyltransferase compare
mRNA_1480 9848 +1.1 1.0 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_2227 10595 +1.1 1.0 K12392 AP1B1 AP-1 complex subunit beta-1 compare
mRNA_6883 15251 +1.1 6.7 BLAST similar to An03g02750 [Aspergillus kawachii IFO 4308] compare
mRNA_65 8433 +1.1 1.8 K12882 NCBP1, CBP80 nuclear cap-binding protein subunit 1 compare
mRNA_7737 16105 +1.1 2.1 HMMPfam-Antibiotic biosynthesis monooxygenase-PF03992,SUPERFAMILY--SSF54909 compare
mRNA_8404 16772 +1.1 2.3 Hypothetical Protein compare
mRNA_5999 14367 +1.1 1.7 KOG1064 RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily compare
mRNA_7433 15801 +1.1 0.8 K10356 MYO1 myosin I compare
mRNA_7071 15439 +1.1 1.9 BLAST histone H3 h3.1 [Schizosaccharomyces japonicus yF... compare
mRNA_3302 11670 +1.1 3.4 K07232 chaC cation transport protein ChaC compare
mRNA_1214 9582 +1.1 1.3 Hypothetical Protein compare
mRNA_811 9179 +1.1 3.8 Interpro Glycosyl-transferase for dystroglycan compare
mRNA_3987 12355 +1.1 3.8 K08576 CAPN7 calpain-7 compare
mRNA_2764 11132 +1.1 3.0 Hypothetical Protein compare
mRNA_1366 9734 +1.1 4.0 K00661 maa maltose O-acetyltransferase compare
mRNA_5594 13962 +1.1 2.4 K07943 ARL2 ADP-ribosylation factor-like protein 2 compare
mRNA_8230 16598 +1.1 4.7 K09668 LARGE glycosyltransferase-like protein LARGE compare
mRNA_4280 12648 +1.1 6.7 HMMPfam-Actin interacting protein 3-PF03915,SMART-Actin interacting protein 3-SM00806 compare
mRNA_5540 13908 +1.1 6.8 Interpro GDP-fucose protein O-fucosyltransferase compare
mRNA_386 8754 +1.1 2.7 Hypothetical Protein compare
mRNA_2616 10984 +1.1 2.4 KOG4076 Regulator of ATP-sensitive K+ channels Alpha-endosulfine/ARPP-19 and related cAMP-regulated phosphoproteins compare
mRNA_84 8452 +1.1 1.4 K01522 FHIT bis(5'-adenosyl)-triphosphatase compare
mRNA_2660 11028 +1.1 2.6 Hypothetical Protein compare
mRNA_6801 15169 +1.0 4.8 K15279 SLC35C1, FUCT1 solute carrier family 35 (GDP-fucose transporter), member C1 compare
mRNA_3942 12310 +1.0 3.1 K20298 VPS52 vacuolar protein sorting-associated protein 52 compare
mRNA_2330 10698 +1.0 2.2 KOG0583 Serine/threonine protein kinase compare
mRNA_1582 9950 +1.0 1.1 K01381 PEP4 saccharopepsin compare
mRNA_8205 16573 +1.0 1.6 K11339 MORF4L1, MRG15, EAF3 mortality factor 4-like protein 1 compare
mRNA_3135 11503 +1.0 2.8 HMMPfam-Alpha/beta hydrolase family-PF12695,SUPERFAMILY--SSF53474 compare
mRNA_8332 16700 +1.0 6.1 K10082 LMAN2, VIP36 lectin, mannose-binding 2 compare
mRNA_7666 16034 +1.0 1.3 K20184 VPS41 vacuolar protein sorting-associated protein 41 compare
mRNA_8237 16605 +1.0 5.9 K04345 PKA protein kinase A compare
mRNA_3516 11884 +1.0 1.2 K01466 allB allantoinase compare
mRNA_3739 12107 +1.0 2.2 HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,ProSiteProfiles-Expansin, family-45 endoglucanase-like domain profile.-PS50842,SUPERFAMILY--SSF50685 compare
mRNA_5256 13624 +1.0 2.8 SUPERFAMILY--SSF53448 compare
mRNA_5386 13754 +1.0 1.4 Hypothetical Protein compare
mRNA_6839 15207 +1.0 7.3 K17257 ITFG1 integrin alpha FG-GAP repeat containing protein 1 compare
mRNA_4237 12605 +1.0 0.8 K15100 SLC25A1, CTP solute carrier family 25 (mitochondrial citrate transporter), member 1 compare
mRNA_1614 9982 +1.0 3.6 KOG2819 Uncharacterized conserved protein compare
mRNA_2438 10806 +1.0 1.0 HMMPfam-Predicted coiled-coil protein (DUF2205)-PF10224 compare
mRNA_33 8401 +1.0 5.0 HMMPfam-Myosin-binding striated muscle assembly central-PF11701,SUPERFAMILY--SSF48371 compare
mRNA_5020 13388 +1.0 1.4 K20178 VPS8 vacuolar protein sorting-associated protein 8 compare
mRNA_2113 10481 +1.0 1.3 KOG0015 Regulator of arginine metabolism and related MADS box-containing transcription factors compare
mRNA_7044 15412 +1.0 5.0 KOG4299 PHD Zn-finger protein compare
mRNA_443 8811 +1.0 2.5 KOG2742 Predicted oxidoreductase compare
mRNA_2189 10557 +1.0 2.7 K11236 CDC24 cell division control protein 24 compare
mRNA_4290 12658 +1.0 1.3 Hypothetical Protein compare
mRNA_263 8631 +1.0 4.7 K01537 E3.6.3.8 Ca2+-transporting ATPase compare
mRNA_2729 11097 +1.0 2.7 KOG1485 Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) compare
mRNA_2828 11196 +1.0 2.5 Hypothetical Protein compare
mRNA_3649 12017 +1.0 3.0 HMMPfam-Protein of unknown function, DUF604-PF04646 compare
mRNA_8011 16379 +1.0 1.1 K09537 DNAJC17 DnaJ homolog subfamily C member 17 compare
mRNA_2003 10371 +1.0 6.0 KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif compare
mRNA_5988 14356 +0.9 6.2 K06111 EXOC4, SEC8 exocyst complex component 4 compare
mRNA_3285 11653 +0.9 3.0 KOG2069 Golgi transport complex subunit compare
mRNA_2405 10773 +0.9 11.4 KOG1910 Uncharacterized conserved protein compare
mRNA_4101 12469 +0.9 1.5 Hypothetical Protein compare
mRNA_5548 13916 +0.9 2.3 KOG4006 Anti-proliferation factor BTG1/TOB compare
mRNA_5102 13470 +0.9 7.9 KOG0619 FOG Leucine rich repeat compare
mRNA_7874 16242 +0.9 1.6 K02202 CDK7 cyclin-dependent kinase 7 compare
mRNA_4137 12505 +0.9 6.6 BLAST putative protein [Melanopsichium pennsylvanicum 4] compare
mRNA_7842 16210 +0.9 3.3 HMMPfam-Ankyrin repeats (3 copies)-PF12796,ProSiteProfiles-Ankyrin repeat profile.-PS50088,ProSiteProfiles-Ankyrin repeat region circular profile.-PS50297,SMART-ankyrin repeats-SM00248,SUPERFAMILY--SSF48403 compare
mRNA_4153 12521 +0.9 3.6 K20347 TMED2, EMP24 p24 family protein beta-1 compare
mRNA_2879 11247 +0.9 1.3 HMMPfam-Protein of unknown function (DUF3237)-PF11578 compare
mRNA_6562 14930 +0.9 1.9 K20353 SEC16 COPII coat assembly protein SEC16 compare
mRNA_7191 15559 +0.9 0.8 Hypothetical Protein compare
mRNA_7062 15430 +0.9 1.5 HMMPfam-N-acetyltransferase-PF00797,SUPERFAMILY--SSF54001 compare
mRNA_5555 13923 +0.9 1.9 K19984 EXOC5, SEC10 exocyst complex component 5 compare
mRNA_6506 14874 +0.9 4.1 KOG2712 Transcriptional coactivator compare
mRNA_2244 10612 +0.9 1.0 KOG4120 G/T mismatch-specific thymine DNA glycosylase compare
mRNA_7396 15764 +0.9 1.1 K18584 ACTR3, ARP3 actin-related protein 3 compare
mRNA_645 9013 +0.9 0.9 KOG3104 Mod5 protein sorting/negative effector of RNA Pol III synthesis compare
mRNA_5369 13737 +0.9 0.5 K03627 MBF1 putative transcription factor compare
mRNA_2101 10469 +0.9 4.0 K12041 SLC9A6_7, NHE6_7 solute carrier family 9 (sodium/hydrogen exchanger), member 6/7 compare
mRNA_5045 13413 +0.9 2.7 K01111 E3.1.3.68 2-deoxyglucose-6-phosphatase compare
mRNA_2566 10934 +0.9 2.8 KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) compare
mRNA_7536 15904 +0.9 2.3 KOG2216 Conserved coiled/coiled coil protein compare
mRNA_7583 15951 +0.9 1.8 HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713 compare
mRNA_4917 13285 +0.9 1.2 KOG2920 Predicted methyltransferase compare
mRNA_1719 10087 +0.9 2.5 Hypothetical Protein compare
mRNA_6794 15162 +0.9 2.8 K10773 NTH endonuclease III compare
mRNA_4575 12943 +0.9 3.3 HMMPfam-ICE2-PF08426 compare
mRNA_1290 9658 +0.9 1.2 K03872 TCEB1 transcription elongation factor B, polypeptide 1 compare
mRNA_6712 15080 +0.9 2.2 Hypothetical Protein compare
mRNA_7674 16042 +0.9 1.1 SUPERFAMILY--SSF48371 compare
mRNA_1610 9978 +0.9 2.4 HMMPfam-CrcB-like protein-PF02537 compare
mRNA_5935 14303 +0.9 1.2 HMMPfam-Homeobox KN domain-PF05920,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SUPERFAMILY--SSF46689 compare
mRNA_1282 9650 +0.9 0.9 Hypothetical Protein compare
mRNA_1741 10109 +0.9 3.0 HMMPfam-Calcipressin-PF04847 compare
mRNA_5144 13512 +0.9 2.0 BLAST putative mit domain-containing protein [Erysiphe neca... compare
mRNA_2248 10616 +0.9 2.8 K01338 lon ATP-dependent Lon protease compare
mRNA_7495 15863 +0.9 2.7 K10089 M6PR cation-dependent mannose-6-phosphate receptor compare
mRNA_1846 10214 +0.9 5.2 KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif compare
mRNA_4067 12435 +0.9 1.8 KOG0324 Uncharacterized conserved protein compare
mRNA_6757 15125 +0.9 0.8 K11838 USP7, UBP15 ubiquitin carboxyl-terminal hydrolase 7 compare
mRNA_1806 10174 +0.9 1.6 BLAST related to C2H2 zinc finger protein [Ustilago hordei] compare
mRNA_7156 15524 +0.9 3.2 K20102 YTHDF YTH domain-containing family protein compare
mRNA_4493 12861 +0.9 1.5 SUPERFAMILY--SSF52047 compare
mRNA_3413 11781 +0.8 2.1 K00622 nat arylamine N-acetyltransferase compare
mRNA_8188 16556 +0.8 1.8 K05012 CLCN3_4_5 chloride channel 3/4/5 compare
mRNA_869 9237 +0.8 4.8 K17605 PPP2R4, PTPA serine/threonine-protein phosphatase 2A activator compare
mRNA_8351 16719 +0.8 0.8 K14303 NUP160, NUP120 nuclear pore complex protein Nup160 compare
mRNA_7588 15956 +0.8 2.1 Hypothetical Protein compare
mRNA_2373 10741 +0.8 3.9 K08286 E2.7.11.- protein-serine/threonine kinase compare
mRNA_4312 12680 +0.8 6.0 K14802 DRS2, ATP8A phospholipid-transporting ATPase compare
mRNA_2319 10687 +0.8 2.3 KOG3872 FOG FHA domain compare
mRNA_4289 12657 +0.8 2.1 K15445 TRMT10A, TRM10, RG9MTD2 tRNA (guanine9-N1)-methyltransferase compare
mRNA_3426 11794 +0.8 3.9 K08498 STX6 syntaxin 6 compare
mRNA_2251 10619 +0.8 1.5 KOG3313 Molecular chaperone Prefoldin, subunit 3 compare
mRNA_7738 16106 +0.8 3.3 HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097 compare
mRNA_3898 12266 +0.8 2.8 HMMPfam-Acetyltransferase (GNAT) domain-PF13508,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729 compare
mRNA_4419 12787 +0.8 2.5 K11121 SIR2 NAD-dependent histone deacetylase SIR2 compare
mRNA_3012 11380 +0.8 5.1 K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit compare
mRNA_4108 12476 +0.8 2.3 HMMPfam-Aminotransferase class IV-PF01063,SUPERFAMILY--SSF56752 compare
mRNA_6799 15167 +0.8 0.0 K00033 PGD, gnd, gntZ 6-phosphogluconate dehydrogenase compare
mRNA_2915 11283 +0.8 2.0 Hypothetical Protein compare
mRNA_7855 16223 +0.8 1.0 K15443 TRM82, WDR4 tRNA (guanine-N(7)-)-methyltransferase subunit TRM82 compare
mRNA_7346 15714 +0.8 1.8 Hypothetical Protein compare
mRNA_1450 9818 +0.8 1.2 K20826 RPAP1 RNA polymerase II-associated protein 1 compare
mRNA_1456 9824 +0.8 0.7 Hypothetical Protein compare
mRNA_2936 11304 +0.8 3.3 Hypothetical Protein compare
mRNA_3322 11690 +0.8 2.1 HMMPfam-Ribosomal RNA-processing protein 7 (RRP7)-PF12923 compare
mRNA_5805 14173 +0.8 1.9 HMMPfam-Ion transport protein-PF00520,SUPERFAMILY--SSF81324 compare
mRNA_2521 10889 +0.8 0.5 BLAST beta-glucosidase 1 precursor [Aspergillus rambellii] compare
mRNA_6513 14881 +0.8 5.2 HMMPfam-Glycosyl transferase family 90-PF05686,SMART-Putative lipopolysaccharide-modifying enzyme.-SM00672 compare
mRNA_2406 10774 +0.8 3.5 KOG4111 Translocase of outer mitochondrial membrane complex, subunit TOM22 compare
mRNA_7641 16009 +0.8 3.3 Hypothetical Protein compare
mRNA_5265 13633 +0.8 3.5 K18749 LSM14, RAP55, SCD6 protein LSM14 compare
mRNA_953 9321 +0.8 1.5 Hypothetical Protein compare
mRNA_7449 15817 +0.8 1.9 BLAST GH19984 [Drosophila grimshawi] compare
mRNA_4693 13061 +0.8 1.4 Hypothetical Protein compare
mRNA_3659 12027 +0.8 2.4 Hypothetical Protein compare
mRNA_6368 14736 +0.8 0.9 KOG2049 Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) compare
mRNA_1945 10313 +0.8 3.0 Hypothetical Protein compare
mRNA_8440 16808 +0.8 1.1 Hypothetical Protein compare
mRNA_1200 9568 +0.8 2.7 KOG3132 m3G-cap-specific nuclear import receptor (Snurportin1) compare
mRNA_6447 14815 +0.8 1.8 Hypothetical Protein compare
mRNA_5510 13878 +0.8 1.8 ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850 compare
mRNA_2131 10499 +0.8 1.7 K09580 PDIA1, P4HB protein disulfide-isomerase A1 compare
mRNA_7486 15854 +0.8 2.2 K08287 E2.7.12.1 dual-specificity kinase compare
mRNA_2036 10404 +0.8 2.5 HMMPfam-Alpha and gamma adaptin binding protein p34-PF10199 compare
mRNA_259 8627 +0.8 2.6 HMMPfam-Domain of unknown function (DUF1771)-PF08590,ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103,ProSiteProfiles-Smr domain profile.-PS50828,SMART-zinc finger-SM00356 compare
mRNA_286 8654 +0.8 2.9 SUPERFAMILY--SSF52047 compare
mRNA_5983 14351 +0.8 1.2 Hypothetical Protein compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in growth on ricinoleic acid experiments

For growth on ricinoleic acid YNB Glucose across organisms