Experiment setAYPD_YPD for Rhodosporidium toruloides IFO0880

Compare to:

YPD

200 most detrimental genes:

  gene name fitness t score description  
mRNA_1932 10300 +3.7 2.0 BLAST family 69 glycosyltransferase [Melampsora larici-... compare
mRNA_3832 12200 +3.3 2.0 Hypothetical Protein compare
mRNA_6771 15139 +3.1 1.0 Hypothetical Protein compare
mRNA_3737 12105 +2.9 1.9 BLAST TPR-2 domain protein [Rhizoctonia solani AG-3 Rhs1AP] compare
mRNA_3955 12323 +2.7 0.9 K02355 fusA, GFM, EFG elongation factor G compare
mRNA_4290 12658 +2.7 1.6 Hypothetical Protein compare
mRNA_7085 15453 +2.6 2.3 HMMPfam-TRF2-interacting telomeric protein/Rap1 - C terminal domain-PF11626,SUPERFAMILY--SSF46689 compare
mRNA_988 9356 +2.6 1.4 BLAST glycerol-3-phosphate O-acyltransferase [Sanghuangporu... compare
mRNA_8371 16739 +2.6 0.9 HMMPfam-GPR1/FUN34/yaaH family-PF01184 compare
mRNA_1215 9583 +2.6 1.6 Hypothetical Protein compare
mRNA_2701 11069 +2.5 1.5 HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448 compare
mRNA_5222 13590 +2.4 2.2 Hypothetical Protein compare
mRNA_5917 14285 +2.4 0.9 Hypothetical Protein compare
mRNA_2330 10698 +2.4 1.5 KOG0583 Serine/threonine protein kinase compare
mRNA_3559 11927 +2.3 1.2 K18622 ADD adducin compare
mRNA_3015 11383 +2.3 0.6 KOG3252 Uncharacterized conserved protein compare
mRNA_4237 12605 +2.2 1.4 K15100 SLC25A1, CTP solute carrier family 25 (mitochondrial citrate transporter), member 1 compare
mRNA_6533 14901 +2.2 1.4 Hypothetical Protein compare
mRNA_4618 12986 +2.1 1.1 Hypothetical Protein compare
mRNA_5737 14105 +2.1 1.6 HMMPfam-Arsenite-resistance protein 2-PF04959,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157 compare
mRNA_3631 11999 +2.1 0.6 Hypothetical Protein compare
mRNA_1139 9507 +2.0 3.0 KOG0948 Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily compare
mRNA_7858 16226 +2.0 1.0 K11673 ACTR8, ARP8, INO80N actin-related protein 8 compare
mRNA_858 9226 +2.0 0.6 K10599 PRPF19, PRP19 pre-mRNA-processing factor 19 compare
mRNA_441 8809 +1.9 1.2 K13989 DERL2_3 Derlin-2/3 compare
mRNA_3756 12124 +1.9 1.9 HMMPfam-Protein of unknown function (DUF2665)-PF11654 compare
mRNA_2822 11190 +1.9 0.6 SUPERFAMILY--SSF52047 compare
mRNA_5642 14010 +1.9 1.0 Interpro Mitochondrial inner-membrane-bound regulator compare
mRNA_3815 12183 +1.8 0.6 K06631 PLK1 polo-like kinase 1 compare
mRNA_6020 14388 +1.8 0.9 SUPERFAMILY--SSF52047 compare
mRNA_2462 10830 +1.8 1.0 SUPERFAMILY--SSF52047 compare
mRNA_8404 16772 +1.8 2.5 Hypothetical Protein compare
mRNA_3232 11600 +1.8 1.0 ProSiteProfiles-BRCT domain profile.-PS50172 compare
mRNA_8219 16587 +1.8 3.0 K15202 GTF3C5, TFC1 general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) compare
mRNA_4013 12381 +1.8 1.2 HMMPfam-DJ-1/PfpI family-PF01965,HMMPfam-N-terminal domain of DJ-1_PfpI family-PF13587,SUPERFAMILY--SSF52317 compare
mRNA_2874 11242 +1.7 2.0 K00555 TRMT1, trm1 tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase compare
mRNA_3600 11968 +1.7 1.0 HMMPfam-PWWP domain-PF00855,ProSiteProfiles-PWWP domain profile.-PS50812,SMART-domain with conserved PWWP motif-SM00293,SUPERFAMILY--SSF63748 compare
mRNA_1213 9581 +1.7 1.5 KOG1205 Predicted dehydrogenase compare
mRNA_6738 15106 +1.7 1.2 Hypothetical Protein compare
mRNA_3736 12104 +1.7 0.7 K00573 E2.1.1.77, pcm protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
mRNA_7218 15586 +1.7 0.8 K20405 NPRL2 nitrogen permease regulator 2-like protein compare
mRNA_5990 14358 +1.7 1.9 Hypothetical Protein compare
mRNA_2352 10720 +1.7 1.1 K02903 RP-L28e, RPL28 large subunit ribosomal protein L28e compare
mRNA_5436 13804 +1.7 0.9 Hypothetical Protein compare
mRNA_5863 14231 +1.7 1.8 K09281 K09281 copper-fist transcription factor compare
mRNA_7891 16259 +1.6 2.1 Hypothetical Protein compare
mRNA_5204 13572 +1.6 0.5 Hypothetical Protein compare
mRNA_5619 13987 +1.6 0.6 K09885 AQPF aquaporin rerated protein, other eukaryote compare
mRNA_1804 10172 +1.6 0.6 Hypothetical Protein compare
mRNA_3657 12025 +1.6 1.1 Hypothetical Protein compare
mRNA_523 8891 +1.6 2.2 K11644 SIN3A paired amphipathic helix protein Sin3a compare
mRNA_7126 15494 +1.6 1.9 K15122 SLC41A solute carrier family 41 compare
mRNA_125 8493 +1.6 2.0 HMMPfam-Alpha/beta hydrolase family-PF12695,SUPERFAMILY--SSF53474 compare
mRNA_802 9170 +1.6 -0.0 SUPERFAMILY--SSF52047 compare
mRNA_6905 15273 +1.6 4.0 K14300 NUP133 nuclear pore complex protein Nup133 compare
mRNA_5334 13702 +1.5 1.0 K14563 NOP1, FBL rRNA 2'-O-methyltransferase fibrillarin compare
mRNA_2647 11015 +1.5 0.2 Hypothetical Protein compare
mRNA_4101 12469 +1.5 0.5 Hypothetical Protein compare
mRNA_1921 10289 +1.5 1.3 KOG4373 Predicted 3'-5' exonuclease compare
mRNA_5611 13979 +1.5 0.2 HMMPfam-Protein of unknown function (DUF2433)-PF10360 compare
mRNA_449 8817 +1.5 2.6 HMMPfam-ESSS subunit of NADH-ubiquinone oxidoreductase (complex I)-PF10183 compare
mRNA_8437 16805 +1.5 0.6 K16948 CDC12 cell division control protein 12 compare
mRNA_5170 13538 +1.5 0.7 Hypothetical Protein compare
mRNA_21 8389 +1.5 2.7 SUPERFAMILY--SSF51045 compare
mRNA_6799 15167 +1.5 0.5 K00033 PGD, gnd, gntZ 6-phosphogluconate dehydrogenase compare
mRNA_1627 9995 +1.4 1.0 K18551 SDT1 pyrimidine and pyridine-specific 5'-nucleotidase compare
mRNA_5017 13385 +1.4 1.6 K08963 mtnA methylthioribose-1-phosphate isomerase compare
mRNA_7921 16289 +1.4 0.5 KOG3022 Predicted ATPase, nucleotide-binding compare
mRNA_3462 11830 +1.4 0.6 K17978 NUM1 nuclear migration protein NUM1 compare
mRNA_7419 15787 +1.4 0.7 Hypothetical Protein compare
mRNA_7881 16249 +1.4 1.4 Hypothetical Protein compare
mRNA_7999 16367 +1.4 0.4 K10994 RAD9A cell cycle checkpoint control protein RAD9A compare
mRNA_8193 16561 +1.4 1.1 Hypothetical Protein compare
mRNA_6364 14732 +1.4 1.6 BLAST putative protein [Melanopsichium pennsylvanicum 4] compare
mRNA_7396 15764 +1.4 0.8 K18584 ACTR3, ARP3 actin-related protein 3 compare
mRNA_4707 13075 +1.3 1.8 KOG4431 Uncharacterized protein, induced by hypoxia compare
mRNA_528 8896 +1.3 1.3 BLAST hydroxymethylglutaryl-mitochondrial isoform 1 [Lichth... compare
mRNA_1297 9665 +1.3 0.7 K17292 TBCA tubulin-specific chaperone A compare
mRNA_8204 16572 +1.3 0.5 KOG3289 Uncharacterized conserved protein encoded by sequence overlapping the COX4 gene compare
mRNA_4628 12996 +1.3 2.2 KOG0253 Synaptic vesicle transporter SV2 (major facilitator superfamily) compare
mRNA_179 8547 +1.3 2.8 KOG2886 Uncharacterized conserved protein compare
mRNA_118 8486 +1.3 0.6 HMMPfam-Protein of unknown function (DUF1674)-PF07896 compare
mRNA_1654 10022 +1.3 0.8 BLAST expressed protein [Cryptococcus neoformans var. neofo... compare
mRNA_1118 9486 +1.3 2.2 HMMPfam-RTA1 like protein-PF04479 compare
mRNA_3121 11489 +1.3 0.9 KOG1039 Predicted E3 ubiquitin ligase compare
mRNA_2515 10883 +1.3 1.2 KOG0035 Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) compare
mRNA_7336 15704 +1.3 2.4 Hypothetical Protein compare
mRNA_4528 12896 +1.3 2.5 Hypothetical Protein compare
mRNA_5723 14091 +1.3 1.9 K15447 TRM44, METTL19 tRNASer (uridine44-2'-O)-methyltransferase compare
mRNA_3812 12180 +1.2 3.6 HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232 compare
mRNA_4807 13175 +1.2 2.9 K03119 tauD taurine dioxygenase compare
mRNA_5826 14194 +1.2 1.8 SUPERFAMILY--SSF52047 compare
mRNA_7146 15514 +1.2 2.4 Hypothetical Protein compare
mRNA_1922 10290 +1.2 1.0 Hypothetical Protein compare
mRNA_4186 12554 +1.2 1.6 KOG2806 Chitinase compare
mRNA_7662 16030 +1.2 2.3 K13519 LPT1, ALE1 lysophospholipid acyltransferase compare
mRNA_4812 13180 +1.2 0.9 K15255 PIF1 ATP-dependent DNA helicase PIF1 compare
mRNA_7974 16342 +1.2 1.7 Hypothetical Protein compare
mRNA_4703 13071 +1.2 1.2 Hypothetical Protein compare
mRNA_6402 14770 +1.2 0.7 Hypothetical Protein compare
mRNA_1027 9395 +1.2 0.9 Hypothetical Protein compare
mRNA_2227 10595 +1.2 0.8 K12392 AP1B1 AP-1 complex subunit beta-1 compare
mRNA_5935 14303 +1.2 1.5 HMMPfam-Homeobox KN domain-PF05920,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SUPERFAMILY--SSF46689 compare
mRNA_1574 9942 +1.1 1.0 K06867 K06867 uncharacterized protein compare
mRNA_8363 16731 +1.1 3.0 KOG1693 emp24/gp25L/p24 family of membrane trafficking proteins compare
mRNA_4254 12622 +1.1 1.9 HMMPfam-Lactonase, 7-bladed beta-propeller-PF10282,SUPERFAMILY--SSF75011 compare
mRNA_921 9289 +1.1 2.2 KOG1485 Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) compare
mRNA_1261 9629 +1.1 1.0 K04712 DEGS sphingolipid Delta-4 desaturase compare
mRNA_3405 11773 +1.1 -0.6 K17922 SNX8, MVP1 sorting nexin-8 compare
mRNA_7280 15648 +1.1 2.1 Hypothetical Protein compare
mRNA_8181 16549 +1.1 1.4 KOG1752 Glutaredoxin and related proteins compare
mRNA_273 8641 +1.1 1.1 K15174 PAF1 RNA polymerase II-associated factor 1 compare
mRNA_5173 13541 +1.1 0.9 KOG1189 Global transcriptional regulator, cell division control protein compare
mRNA_1483 9851 +1.1 0.3 BLAST Protein priB [Grifola frondosa] compare
mRNA_2677 11045 +1.1 1.2 ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157 compare
mRNA_7096 15464 +1.1 1.9 K16729 CHORDC1, CHP1 cysteine and histidine-rich domain-containing protein 1 compare
mRNA_5174 13542 +1.1 2.2 Hypothetical Protein compare
mRNA_4039 12407 +1.1 3.5 K00825 AADAT, KAT2 kynurenine/2-aminoadipate aminotransferase compare
mRNA_7378 15746 +1.1 1.8 KOG1180 Acyl-CoA synthetase compare
mRNA_2748 11116 +1.1 1.1 KOG3772 M-phase inducer phosphatase compare
mRNA_7106 15474 +1.1 1.7 K11313 SUPT3H, SPT3 transcription initiation protein SPT3 compare
mRNA_2097 10465 +1.1 0.8 K03217 yidC, spoIIIJ, OXA1, ccfA YidC/Oxa1 family membrane protein insertase compare
mRNA_1993 10361 +1.1 0.4 Hypothetical Protein compare
mRNA_6429 14797 +1.1 0.5 BLAST putative protein [Melanopsichium pennsylvanicum 4] compare
mRNA_3192 11560 +1.1 2.3 HMMPfam-Hypothetical protein FLILHELTA-PF10306 compare
mRNA_1538 9906 +1.1 1.1 K20307 TRAPPC10, TRS130 trafficking protein particle complex subunit 10 compare
mRNA_5305 13673 +1.1 0.7 K14859 SSF1_2 ribosome biogenesis protein SSF1/2 compare
mRNA_2545 10913 +1.1 0.2 K05767 IQGAP2_3 Ras GTPase-activating-like protein IQGAP2/3 compare
mRNA_7417 15785 +1.1 0.5 K03353 APC6, CDC16 anaphase-promoting complex subunit 6 compare
mRNA_3924 12292 +1.1 -0.4 KOG1993 Nuclear transport receptor KAP120 (importin beta superfamily) compare
mRNA_6288 14656 +1.1 1.8 KOG0876 Manganese superoxide dismutase compare
mRNA_4311 12679 +1.1 2.4 HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899 compare
mRNA_138 8506 +1.1 3.1 KOG4473 Uncharacterized membrane protein compare
mRNA_6846 15214 +1.1 0.6 K02603 ORC1 origin recognition complex subunit 1 compare
mRNA_7924 16292 +1.1 1.1 Hypothetical Protein compare
mRNA_4805 13173 +1.1 2.0 ProSiteProfiles-BTB domain profile.-PS50097 compare
mRNA_5280 13648 +1.1 2.3 KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily compare
mRNA_5507 13875 +1.1 0.4 KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase compare
mRNA_645 9013 +1.1 0.8 KOG3104 Mod5 protein sorting/negative effector of RNA Pol III synthesis compare
mRNA_453 8821 +1.1 2.5 SUPERFAMILY--SSF52047 compare
mRNA_6772 15140 +1.1 1.1 KOG0202 Ca2+ transporting ATPase compare
mRNA_5432 13800 +1.0 1.6 Hypothetical Protein compare
mRNA_109 8477 +1.0 0.4 Hypothetical Protein compare
mRNA_2646 11014 +1.0 1.3 HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52058 compare
mRNA_6354 14722 +1.0 2.5 BLAST Mei2p [Pneumocystis carinii] compare
mRNA_1188 9556 +1.0 0.7 Hypothetical Protein compare
mRNA_815 9183 +1.0 0.7 K04555 UBE2G2, UBC7 ubiquitin-conjugating enzyme E2 G2 compare
mRNA_4966 13334 +1.0 1.2 Hypothetical Protein compare
mRNA_6674 15042 +1.0 2.6 HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232 compare
mRNA_7674 16042 +1.0 0.3 SUPERFAMILY--SSF48371 compare
mRNA_4992 13360 +1.0 2.5 Hypothetical Protein compare
mRNA_5889 14257 +1.0 0.5 K02977 RP-S27Ae, RPS27A small subunit ribosomal protein S27Ae compare
mRNA_2549 10917 +1.0 0.4 HMMPfam-Chromatin modification-related protein EAF7-PF07904 compare
mRNA_8317 16685 +1.0 2.2 Hypothetical Protein compare
mRNA_6123 14491 +1.0 1.2 BLAST DNA polymerase [Rhizoctonia solani] compare
mRNA_4723 13091 +1.0 0.8 Hypothetical Protein compare
mRNA_1500 9868 +1.0 1.1 K05770 TSPO, BZRP benzodiazapine receptor compare
mRNA_7627 15995 +1.0 3.0 K01273 DPEP membrane dipeptidase compare
mRNA_7741 16109 +1.0 2.3 Hypothetical Protein compare
mRNA_7671 16039 +1.0 0.8 SUPERFAMILY--SSF56112 compare
mRNA_7266 15634 +1.0 1.1 Hypothetical Protein compare
mRNA_3788 12156 +1.0 3.2 Hypothetical Protein compare
mRNA_3626 11994 +1.0 1.8 BLAST SH3 domain-containing protein [Rhizoctonia solani AG-... compare
mRNA_8100 16468 +1.0 1.4 BLAST DigA protein [Rhizoctonia solani AG-3 Rhs1AP] compare
mRNA_6615 14983 +1.0 3.0 Hypothetical Protein compare
mRNA_3285 11653 +1.0 2.7 KOG2069 Golgi transport complex subunit compare
mRNA_326 8694 +1.0 1.0 K17983 SHE9 sensitive to high expression protein 9, mitochondrial compare
mRNA_6144 14512 +1.0 2.4 KOG1414 Transcriptional activator FOSB/c-Fos and related bZIP transcription factors compare
mRNA_6873 15241 +1.0 3.0 K01409 KAE1, tsaD, QRI7 N6-L-threonylcarbamoyladenine synthase compare
mRNA_5999 14367 +1.0 1.1 KOG1064 RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily compare
mRNA_375 8743 +1.0 1.6 HMMPfam-Cytidine and deoxycytidylate deaminase zinc-binding region-PF00383,ProSitePatterns-Cytidine and deoxycytidylate deaminases zinc-binding region signature.-PS00903,SUPERFAMILY--SSF53927 compare
mRNA_131 8499 +1.0 0.4 K11092 SNRPA1 U2 small nuclear ribonucleoprotein A' compare
mRNA_4009 12377 +1.0 0.8 K10639 CCNB1IP1, HEI10 E3 ubiquitin-protein ligase CCNP1IP1 compare
mRNA_4985 13353 +1.0 0.5 BLAST vps9 domain protein [Zymoseptoria brevis] compare
mRNA_6278 14646 +1.0 -0.0 K17080 PHB1 prohibitin 1 compare
mRNA_755 9123 +0.9 1.6 HMMPfam-Ribosomal protein L9, N-terminal domain-PF01281,SUPERFAMILY--SSF55658 compare
mRNA_4652 13020 +0.9 2.4 Hypothetical Protein compare
mRNA_3203 11571 +0.9 0.3 Hypothetical Protein compare
mRNA_7912 16280 +0.9 0.4 K11434 PRMT1 type I protein arginine methyltransferase compare
mRNA_236 8604 +0.9 2.8 HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF52047 compare
mRNA_3629 11997 +0.9 1.3 Hypothetical Protein compare
mRNA_1668 10036 +0.9 1.4 HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729 compare
mRNA_6728 15096 +0.9 1.4 K14309 NUP93, NIC96 nuclear pore complex protein Nup93 compare
mRNA_7995 16363 +0.9 0.6 Hypothetical Protein compare
mRNA_7034 15402 +0.9 1.8 HMMPfam-UBA/TS-N domain-PF00627,HMMPfam-Uncharacterized conserved protein (DUF2196)-PF09962,ProSiteProfiles-Ubiquitin-associated domain (UBA) profile.-PS50030,SUPERFAMILY--SSF46934 compare
mRNA_4361 12729 +0.9 2.4 K10576 UBE2H, UBC8 ubiquitin-conjugating enzyme E2 H compare
mRNA_2323 10691 +0.9 1.5 Hypothetical Protein compare
mRNA_2531 10899 +0.9 2.8 KOG2816 Predicted transporter ADD1 (major facilitator superfamily) compare
mRNA_7852 16220 +0.9 0.8 Hypothetical Protein compare
mRNA_4621 12989 +0.9 2.2 KOG0141 Isovaleryl-CoA dehydrogenase compare
mRNA_1511 9879 +0.9 0.1 KOG2136 Transcriptional regulators binding to the GC-rich sequences compare
mRNA_6652 15020 +0.9 0.6 K02975 RP-S25e, RPS25 small subunit ribosomal protein S25e compare
mRNA_6182 14550 +0.9 2.8 K06665 SSN6 glucose repression mediator protein compare
mRNA_1600 9968 +0.9 1.4 K12178 COPS4, CSN4 COP9 signalosome complex subunit 4 compare
mRNA_4734 13102 +0.9 3.9 Hypothetical Protein compare
mRNA_2897 11265 +0.9 1.4 K12613 DCP2 mRNA-decapping enzyme subunit 2 compare
mRNA_6590 14958 +0.9 -0.0 K03009 RPB12, POLR2K DNA-directed RNA polymerases I, II, and III subunit RPABC4 compare
mRNA_2123 10491 +0.9 1.8 HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685 compare
mRNA_5732 14100 +0.9 1.7 HMMPfam-bZIP transcription factor-PF00170,HMMPfam-Minimal binding motif of Hap4 for binding to Hap2/3/5-PF10297,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,SUPERFAMILY--SSF57959 compare
mRNA_6375 14743 +0.9 3.2 K01178 E3.2.1.3 glucoamylase compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in growth on ypd experiments

For growth on ypd YPD across organisms