Experiment setAYPD_YPD for Rhodosporidium toruloides IFO0880

Compare to:

YPD

200 most important genes:

  gene name fitness t score description  
mRNA_1285 9653 -3.2 -3.0 Interpro Ribosomal protein 60S L18 and 50S L18e 0 compare
mRNA_3601 11969 -2.9 -0.9 K11367 CHD1 chromodomain-helicase-DNA-binding protein 1 compare
mRNA_915 9283 -2.8 -1.2 K01950 E6.3.5.1, NADSYN1, QNS1, nadE NAD+ synthase (glutamine-hydrolysing) compare
mRNA_7823 16191 -2.7 -2.0 K03011 RPB3, POLR2C DNA-directed RNA polymerase II subunit RPB3 compare
mRNA_2587 10955 -2.6 -1.6 K04368 MAP2K1, MEK1 mitogen-activated protein kinase kinase 1 compare
mRNA_1299 9667 -2.5 -0.8 K00600 glyA, SHMT glycine hydroxymethyltransferase compare
mRNA_4961 13329 -2.5 -0.8 Hypothetical Protein compare
mRNA_5550 13918 -2.5 -1.3 K09424 REB1 Myb-like DNA-binding protein REB1 compare
mRNA_3019 11387 -2.4 -1.5 KOG2128 Ras GTPase-activating protein family - IQGAP compare
mRNA_3639 12007 -2.4 -1.0 K11204 GCLC glutamate--cysteine ligase catalytic subunit compare
mRNA_8440 16808 -1.9 -0.8 Hypothetical Protein compare
mRNA_1864 10232 -1.9 -1.5 SUPERFAMILY--SSF53300 compare
mRNA_7083 15451 -1.8 -2.1 K18803 HPM1 protein-histidine N-methyltransferase compare
mRNA_6610 14978 -1.8 -1.6 BLAST related to MSL5-branch point bridging protein [Sporis... compare
mRNA_8099 16467 -1.8 -0.6 HMMPfam-SUR7/PalI family-PF06687 compare
mRNA_7759 16127 -1.7 -3.0 K11824 AP2A AP-2 complex subunit alpha compare
mRNA_3313 11681 -1.7 -1.8 K00030 IDH3 isocitrate dehydrogenase (NAD+) compare
mRNA_8135 16503 -1.7 -2.9 K00804 GGPS1 geranylgeranyl diphosphate synthase, type III compare
mRNA_8470 16838 -1.7 -2.0 Hypothetical Protein compare
mRNA_4518 12886 -1.7 -1.2 Hypothetical Protein compare
mRNA_6293 14661 -1.7 -2.9 K18467 VPS29 vacuolar protein sorting-associated protein 29 compare
mRNA_1840 10208 -1.7 -0.6 Hypothetical Protein compare
mRNA_2688 11056 -1.7 -2.0 Hypothetical Protein compare
mRNA_6791 15159 -1.6 -1.8 K00888 PI4KA phosphatidylinositol 4-kinase A compare
mRNA_7657 16025 -1.6 -3.0 KOG2743 Cobalamin synthesis protein compare
mRNA_6516 14884 -1.6 -1.5 Hypothetical Protein compare
mRNA_7103 15471 -1.6 -1.3 Hypothetical Protein compare
mRNA_7855 16223 -1.5 -1.7 K15443 TRM82, WDR4 tRNA (guanine-N(7)-)-methyltransferase subunit TRM82 compare
mRNA_4299 12667 -1.5 -0.7 K12617 PATL1, PAT1 DNA topoisomerase 2-associated protein PAT1 compare
mRNA_8325 16693 -1.5 -0.8 KOG1688 Golgi proteins involved in ER retention (RER) compare
mRNA_2111 10479 -1.5 -0.7 K10575 UBE2G1, UBC7 ubiquitin-conjugating enzyme E2 G1 compare
mRNA_3354 11722 -1.5 -1.1 KOG2395 Protein involved in vacuole import and degradation compare
mRNA_7790 16158 -1.5 -1.0 Hypothetical Protein compare
mRNA_4345 12713 -1.5 -2.3 K04706 PIAS1 E3 SUMO-protein ligase PIAS1 compare
mRNA_2993 11361 -1.5 -2.1 HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685 compare
mRNA_4110 12478 -1.5 -1.3 BLAST metal resistance protein ycf1 [Trichosporon asahii va... compare
mRNA_4065 12433 -1.5 -0.9 KOG1198 Zinc-binding oxidoreductase compare
mRNA_5912 14280 -1.4 -0.9 K11375 ELP4 elongator complex protein 4 compare
mRNA_6368 14736 -1.4 -1.5 KOG2049 Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) compare
mRNA_2592 10960 -1.4 -1.8 HMMPfam-Protein of unknown function (DUF1762)-PF08574 compare
mRNA_313 8681 -1.4 -0.8 Hypothetical Protein compare
mRNA_2327 10695 -1.4 -2.9 Hypothetical Protein compare
mRNA_3453 11821 -1.4 -0.7 KOG2959 Transcriptional regulator compare
mRNA_7391 15759 -1.4 -1.5 K00547 mmuM, BHMT2 homocysteine S-methyltransferase compare
mRNA_1130 9498 -1.4 -1.4 KOG1773 Stress responsive protein compare
mRNA_6285 14653 -1.4 -0.3 K05610 UCHL5, UCH37 ubiquitin carboxyl-terminal hydrolase L5 compare
mRNA_4973 13341 -1.3 -0.4 K18466 VPS26 vacuolar protein sorting-associated protein 26 compare
mRNA_5693 14061 -1.3 -2.7 KOG4186 Peroxisomal biogenesis protein (peroxin) compare
mRNA_481 8849 -1.3 -3.3 K11756 RSC1_2 chromatin structure-remodeling complex subunit RSC1/2 compare
mRNA_8400 16768 -1.3 -2.0 K12189 VPS25, EAP20 ESCRT-II complex subunit VPS25 compare
mRNA_8255 16623 -1.3 -3.0 K01792 E5.1.3.15 glucose-6-phosphate 1-epimerase compare
mRNA_6443 14811 -1.3 -0.5 K10427 DCTN5 dynactin 5 compare
mRNA_2360 10728 -1.3 -1.7 Hypothetical Protein compare
mRNA_5251 13619 -1.3 -1.8 K12867 SYF1, XAB2 pre-mRNA-splicing factor SYF1 compare
mRNA_8008 16376 -1.3 -1.5 BLAST CAMK/CAMKL protein kinase [Microbotryum lychnidis-dio... compare
mRNA_1034 9402 -1.3 -1.8 SMART-N-terminal domain of CBF1 interacting co-repressor CIR-SM01083 compare
mRNA_3597 11965 -1.3 -1.4 K15562 BUR1, SGV1 serine/threonine-protein kinase BUR1 compare
mRNA_5363 13731 -1.3 -0.8 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_1508 9876 -1.3 -2.6 KOG3140 Predicted membrane protein compare
mRNA_6528 14896 -1.2 -2.1 K01514 PRUNE, PPX1 exopolyphosphatase compare
mRNA_5918 14286 -1.2 -1.4 K11498 CENPE centromeric protein E compare
mRNA_4899 13267 -1.2 -2.1 KOG4705 Uncharacterized conserved protein compare
mRNA_6385 14753 -1.2 -0.7 K03107 SRP68 signal recognition particle subunit SRP68 compare
mRNA_1480 9848 -1.2 -0.7 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_963 9331 -1.2 -2.7 K15109 SLC25A20_29, CACT, CACL, CRC1 solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29 compare
mRNA_1214 9582 -1.2 -0.7 Hypothetical Protein compare
mRNA_2485 10853 -1.2 -0.8 K07760 CDK cyclin-dependent kinase compare
mRNA_3727 12095 -1.2 -1.8 SMART-Leucine rich repeat, ribonuclease inhibitor type-SM00368,SUPERFAMILY--SSF52047 compare
mRNA_2233 10601 -1.2 -0.8 Hypothetical Protein compare
mRNA_6400 14768 -1.2 -2.5 K15720 N4BP2 NEDD4-binding protein 2 compare
mRNA_8205 16573 -1.2 -1.5 K11339 MORF4L1, MRG15, EAF3 mortality factor 4-like protein 1 compare
mRNA_8305 16673 -1.2 -2.4 Hypothetical Protein compare
mRNA_1309 9677 -1.1 -2.8 BLAST expressed protein [Cryptococcus neoformans var. neofo... compare
mRNA_562 8930 -1.1 -0.3 HMMPfam-HPC2 and ubinuclein domain-PF08729 compare
mRNA_8368 16736 -1.1 -1.4 K07119 K07119 uncharacterized protein compare
mRNA_996 9364 -1.1 -2.0 K19791 FET3_5 iron transport multicopper oxidase compare
mRNA_6179 14547 -1.1 -2.3 KOG2101 Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s) compare
mRNA_914 9282 -1.1 -0.6 K10903 HUS1 HUS1 checkpoint protein compare
mRNA_2923 11291 -1.1 -3.1 Hypothetical Protein compare
mRNA_934 9302 -1.1 -3.1 K18726 FAF2, UBXD8 FAS-associated factor 2 compare
mRNA_514 8882 -1.1 -0.9 KOG0417 Ubiquitin-protein ligase compare
mRNA_8480 16848 -1.1 -1.9 KOG2174 Leptin receptor gene-related protein compare
mRNA_5885 14253 -1.1 -2.5 KOG1424 Predicted GTP-binding protein MMR1 compare
mRNA_856 9224 -1.1 -2.1 KOG0828 Predicted E3 ubiquitin ligase compare
mRNA_4041 12409 -1.1 -0.6 HMMPfam-Sds3-like-PF08598 compare
mRNA_833 9201 -1.1 -3.6 HMMPfam-Homeobox domain-PF00046,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SMART-Homeodomain-SM00389,SUPERFAMILY--SSF46689 compare
mRNA_2072 10440 -1.1 -0.9 KOG2908 26S proteasome regulatory complex, subunit RPN9/PSMD13 compare
mRNA_3889 12257 -1.1 -2.7 K00587 ICMT, STE14 protein-S-isoprenylcysteine O-methyltransferase compare
mRNA_6938 15306 -1.1 -1.7 SUPERFAMILY--SSF56801 compare
mRNA_1965 10333 -1.0 -1.8 K11422 SETD1, SET1 histone-lysine N-methyltransferase SETD1 compare
mRNA_2407 10775 -1.0 -1.6 K10880 XRCC3 DNA-repair protein XRCC3 compare
mRNA_1569 9937 -1.0 -0.9 KOG3114 Uncharacterized conserved protein compare
mRNA_576 8944 -1.0 -1.5 K20182 VPS33 vacuolar protein sorting-associated protein 33 compare
mRNA_2740 11108 -1.0 -2.9 HMMPfam-SUR7/PalI family-PF06687 compare
mRNA_6448 14816 -1.0 -1.7 HMMPfam-F-box-like-PF12937 compare
mRNA_3328 11696 -1.0 -1.1 BLAST YALIA101S10e03422g1_1 [Yarrowia lipolytica] compare
mRNA_7113 15481 -1.0 -1.4 Hypothetical Protein compare
mRNA_6743 15111 -1.0 -1.4 K06671 STAG1_2, SCC3, IRR1 cohesin complex subunit SA-1/2 compare
mRNA_5891 14259 -1.0 -1.7 K11788 ADE5 phosphoribosylamine--glycine ligase / phosphoribosylformylglycinamidine cyclo-ligase compare
mRNA_8316 16684 -1.0 -0.6 KOG2923 Uncharacterized conserved protein compare
mRNA_635 9003 -1.0 -2.0 KOG1470 Phosphatidylinositol transfer protein PDR16 and related proteins compare
mRNA_4300 12668 -1.0 -1.4 K08257 E3.2.1.101 mannan endo-1,6-alpha-mannosidase compare
mRNA_2433 10801 -1.0 -1.3 K10866 RAD50 DNA repair protein RAD50 compare
mRNA_4912 13280 -1.0 -1.9 KOG3309 Ferredoxin compare
mRNA_7025 15393 -1.0 -2.3 K13122 FRG1 protein FRG1 compare
mRNA_5738 14106 -1.0 -1.5 SUPERFAMILY--SSF54928 compare
mRNA_4917 13285 -1.0 -1.4 KOG2920 Predicted methyltransferase compare
mRNA_3956 12324 -1.0 -1.9 KOG1843 Uncharacterized conserved protein compare
mRNA_7017 15385 -0.9 -1.0 K03574 mutT, NUDT15, MTH2 8-oxo-dGTP diphosphatase compare
mRNA_1615 9983 -0.9 -1.0 K03283 HSPA1_8 heat shock 70kDa protein 1/8 compare
mRNA_3944 12312 -0.9 -2.6 BLAST trna guanine-n1-methyltransferase [Ceraceosorus bomba... compare
mRNA_6534 14902 -0.9 -0.6 HMMPfam-Opy2 protein-PF09463 compare
mRNA_5543 13911 -0.9 -0.5 K15190 MEPCE, BCDIN3 7SK snRNA methylphosphate capping enzyme compare
mRNA_7737 16105 -0.9 -1.2 HMMPfam-Antibiotic biosynthesis monooxygenase-PF03992,SUPERFAMILY--SSF54909 compare
mRNA_8351 16719 -0.9 -1.0 K14303 NUP160, NUP120 nuclear pore complex protein Nup160 compare
mRNA_469 8837 -0.9 -3.1 KOG1012 Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain compare
mRNA_6057 14425 -0.9 -2.6 Hypothetical Protein compare
mRNA_8413 16781 -0.9 -1.7 KOG4484 Uncharacterized conserved protein compare
mRNA_1056 9424 -0.9 -2.3 Hypothetical Protein compare
mRNA_7040 15408 -0.9 -3.4 Hypothetical Protein compare
mRNA_1151 9519 -0.9 -0.8 Hypothetical Protein compare
mRNA_640 9008 -0.9 -1.5 HMMPfam-UV radiation resistance protein and autophagy-related subunit 14-PF10186 compare
mRNA_7169 15537 -0.9 -0.5 K13137 STRAP, UNRIP serine-threonine kinase receptor-associated protein compare
mRNA_569 8937 -0.9 -2.4 K07059 K07059 uncharacterized protein compare
mRNA_1055 9423 -0.9 -1.1 KOG0590 Checkpoint kinase and related serine/threonine protein kinases compare
mRNA_3515 11883 -0.9 -1.9 K01277 DPP3 dipeptidyl-peptidase III compare
mRNA_3418 11786 -0.9 -0.1 KOG1502 Flavonol reductase/cinnamoyl-CoA reductase compare
mRNA_2820 11188 -0.9 -0.4 HMMPfam-2-oxoacid dehydrogenases acyltransferase (catalytic domain)-PF00198,HMMPfam-Biotin-requiring enzyme-PF00364,HMMPfam-e3 binding domain-PF02817,SUPERFAMILY--SSF47005,SUPERFAMILY--SSF51230,SUPERFAMILY--SSF52777 compare
mRNA_5929 14297 -0.9 -1.8 Hypothetical Protein compare
mRNA_1032 9400 -0.9 -1.6 Hypothetical Protein compare
mRNA_3511 11879 -0.9 -0.5 K10875 RAD54L, RAD54 DNA repair and recombination protein RAD54 and RAD54-like protein compare
mRNA_3876 12244 -0.9 -2.0 KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) compare
mRNA_7307 15675 -0.9 -1.9 Hypothetical Protein compare
mRNA_1527 9895 -0.9 -0.7 KOG3272 Predicted coiled-coil protein compare
mRNA_3223 11591 -0.9 -2.1 Hypothetical Protein compare
mRNA_4590 12958 -0.9 -1.9 Hypothetical Protein compare
mRNA_5832 14200 -0.9 -2.3 K02863 RP-L1, MRPL1, rplA large subunit ribosomal protein L1 compare
mRNA_4086 12454 -0.9 -1.6 Hypothetical Protein compare
mRNA_8119 16487 -0.9 -1.9 Hypothetical Protein compare
mRNA_4531 12899 -0.9 -2.8 K03671 trxA thioredoxin 1 compare
mRNA_2990 11358 -0.9 -2.6 SUPERFAMILY--SSF52047 compare
mRNA_6438 14806 -0.9 -2.7 K15456 KTI12 protein KTI12 compare
mRNA_3392 11760 -0.9 -2.1 HMMPfam-Caffeine-induced death protein 2-PF09774 compare
mRNA_6161 14529 -0.9 -2.1 Hypothetical Protein compare
mRNA_8173 16541 -0.9 -0.7 HMMPfam-Glutathione-dependent formaldehyde-activating enzyme-PF04828,SUPERFAMILY--SSF51316 compare
mRNA_5560 13928 -0.8 -1.1 BLAST PROTEIN D2013.6 [Ceraceosorus bombacis] compare
mRNA_6903 15271 -0.8 -2.2 Hypothetical Protein compare
mRNA_1976 10344 -0.8 -0.6 Hypothetical Protein compare
mRNA_7568 15936 -0.8 -0.3 K18753 ZFP36L butyrate response factor 1 compare
mRNA_3030 11398 -0.8 -2.2 Hypothetical Protein compare
mRNA_6836 15204 -0.8 -1.4 Interpro Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family compare
mRNA_2286 10654 -0.8 -1.6 Hypothetical Protein compare
mRNA_1571 9939 -0.8 -3.0 K03695 clpB ATP-dependent Clp protease ATP-binding subunit ClpB compare
mRNA_1947 10315 -0.8 -2.6 K14864 FTSJ1, TRM7 tRNA (cytidine32/guanosine34-2'-O)-methyltransferase compare
mRNA_435 8803 -0.8 -2.6 K14845 RAI1, DOM3Z RAT1-interacting protein compare
mRNA_2548 10916 -0.8 -2.2 KOG1943 Beta-tubulin folding cofactor D compare
mRNA_1788 10156 -0.8 -3.5 K16368 DGK1 diacylglycerol kinase (CTP) compare
mRNA_7916 16284 -0.8 -3.1 K08683 HSD17B10 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
mRNA_7554 15922 -0.8 -0.4 K07359 CAMKK calcium/calmodulin-dependent protein kinase kinase compare
mRNA_6861 15229 -0.8 -3.1 HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473 compare
mRNA_1401 9769 -0.8 -1.7 Hypothetical Protein compare
mRNA_7046 15414 -0.8 0.2 K01341 KEX2 kexin compare
mRNA_4556 12924 -0.8 -1.4 KOG1294 Apurinic/apyrimidinic endonuclease and related enzymes compare
mRNA_5234 13602 -0.8 -1.9 KOG0725 Reductases with broad range of substrate specificities compare
mRNA_2148 10516 -0.8 -2.7 KOG2490 Predicted membrane protein compare
mRNA_3535 11903 -0.8 -1.4 HMMPfam-Protein of unknown function (DUF2419)-PF10343 compare
mRNA_7315 15683 -0.8 -1.4 K05527 bolA BolA protein compare
mRNA_6415 14783 -0.8 -1.1 Hypothetical Protein compare
mRNA_6775 15143 -0.8 -0.5 K14784 CMS1 protein CMS1 compare
mRNA_8377 16745 -0.8 -2.3 HMMPfam-Fungal specific transcription factor domain-PF04082 compare
mRNA_5201 13569 -0.8 -1.5 K02304 MET8 precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase compare
mRNA_1988 10356 -0.8 -2.7 KOG1674 Cyclin compare
mRNA_3483 11851 -0.8 -2.2 KOG0683 Glutamine synthetase compare
mRNA_3428 11796 -0.8 -2.5 Hypothetical Protein compare
mRNA_874 9242 -0.8 -1.6 BLAST Pc13g07060 [Penicillium rubens Wisconsin 54-1255] compare
mRNA_3580 11948 -0.8 -0.4 KOG0715 Molecular chaperone (DnaJ superfamily) compare
mRNA_1684 10052 -0.8 -1.1 Hypothetical Protein compare
mRNA_6005 14373 -0.8 -1.6 Hypothetical Protein compare
mRNA_8216 16584 -0.8 -0.3 K14376 PAP poly(A) polymerase compare
mRNA_4324 12692 -0.8 -2.5 K18754 LIN28 protein lin-28 compare
mRNA_2017 10385 -0.8 -3.4 K12600 SKI3, TTC37 superkiller protein 3 compare
mRNA_6768 15136 -0.8 -1.4 HMMPfam-DNA repair protein endonuclease SAE2/CtIP C-terminus-PF08573 compare
mRNA_539 8907 -0.8 -2.4 HMMPfam-Zinc finger, C2H2 type-PF00096,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157 compare
mRNA_3848 12216 -0.8 -2.0 KOG1817 Ribonuclease compare
mRNA_6609 14977 -0.8 -1.3 KOG1232 Proteins containing the FAD binding domain compare
mRNA_1888 10256 -0.8 -1.1 HMMPfam-Protein of unknown function (DUF2423)-PF10338 compare
mRNA_6141 14509 -0.8 -1.3 HMMPfam-GGL domain-PF00631,SUPERFAMILY--SSF48670 compare
mRNA_4721 13089 -0.8 -0.3 K10643 CNOT4, NOT4, MOT2 CCR4-NOT transcription complex subunit 4 compare
mRNA_4108 12476 -0.8 -2.0 HMMPfam-Aminotransferase class IV-PF01063,SUPERFAMILY--SSF56752 compare
mRNA_1876 10244 -0.8 -1.1 Hypothetical Protein compare
mRNA_7450 15818 -0.8 -0.9 BLAST proteophosphoglycan protein, putative [Rhizoctonia so... compare
mRNA_4617 12985 -0.8 -2.1 Hypothetical Protein compare
mRNA_48 8416 -0.8 -0.9 HMMPfam-Serine hydrolase (FSH1)-PF03959,SUPERFAMILY--SSF53474 compare
mRNA_5821 14189 -0.8 -2.3 SUPERFAMILY--SSF52047 compare
mRNA_5477 13845 -0.8 -0.9 K20179 VPS11, PEP5 vacuolar protein sorting-associated protein 11 compare
mRNA_8279 16647 -0.8 -1.3 BLAST Type-1 angiotensin II receptor-associated protein [Ch... compare
mRNA_3836 12204 -0.8 -3.1 Hypothetical Protein compare
mRNA_4642 13010 -0.8 -1.7 Hypothetical Protein compare
mRNA_1587 9955 -0.8 -2.5 HMMPfam-Protein of unknown function (DUF3759)-PF12585 compare
mRNA_7191 15559 -0.8 -1.1 Hypothetical Protein compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in growth on ypd experiments

For growth on ypd YPD across organisms