Gene info for mRNA_2195 in Rhodosporidium toruloides IFO0880

Name: 10563
Annotation: HMMPfam-Subtilase family-PF00082,HMMPfam-PA domain-PF02225,HMMPfam-Fn3-like domain (DUF1034)-PF06280,PRINTS-Subtilisin serine protease family (S8) signature-PR00723,ProSitePatterns-Serine proteases, subtilase family, aspartic acid active site.-PS00136,ProSitePatterns-Serine proteases, subtilase family, histidine active site.-PS00137,SUPERFAMILY--SSF52025,SUPERFAMILY--SSF52743
Type 1: Protein-coding gene
Located on scaffold scaffold_13, + strand, nucleotides 319,466 to 323,008
See nucleotide sequence around mRNA_2195 or for all of scaffold scaffold_13

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 10558 and 10559 are separated by 841 nucleotides10559 and 10560 are separated by 220 nucleotides10560 and 10561 are separated by 148 nucleotides10561 and 10562 are separated by 487 nucleotides10562 and 10563 are separated by 1358 nucleotides10563 and 10564 are separated by 316 nucleotides10564 and 10565 are separated by 775 nucleotides10565 and 10566 are separated by 641 nucleotides10566 and 10567 are separated by 591 nucleotides10567 and 10568 are separated by 243 nucleotides mRNA_2190: 10558 - K00059 fabG 3-oxoacyl-[acyl-carrier protein] reductase, at 301,262 to 303,174 10558 mRNA_2191: 10559 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048, at 304,016 to 306,697 10559 mRNA_2192: 10560 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 306,918 to 310,071 10560 mRNA_2193: 10561 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 310,220 to 312,834 10561 mRNA_2194: 10562 - BLAST ER to Golgi transport-related protein, putative [Cryp..., at 313,322 to 318,107 10562 mRNA_2195: 10563 - HMMPfam-Subtilase family-PF00082,HMMPfam-PA domain-PF02225,HMMPfam-Fn3-like domain (DUF1034)-PF06280,PRINTS-Subtilisin serine protease family (S8) signature-PR00723,ProSitePatterns-Serine proteases, subtilase family, aspartic acid active site.-PS00136,ProSitePatterns-Serine proteases, subtilase family, histidine active site.-PS00137,SUPERFAMILY--SSF52025,SUPERFAMILY--SSF52743, at 319,466 to 323,008 10563 mRNA_2196: 10564 - HMMPfam-Bromodomain associated-PF07524, at 323,325 to 326,120 10564 mRNA_2197: 10565 - K20042 FCHO F-BAR domain only protein, at 326,896 to 330,044 10565 mRNA_2198: 10566 - Hypothetical Protein, at 330,686 to 331,336 10566 mRNA_2199: 10567 - K05724 FGD5_6 FYVE, RhoGEF and PH domain containing 5/6, at 331,928 to 335,323 10567 mRNA_2200: 10568 - K11423 SETD2, SET2 histone-lysine N-methyltransferase SETD2, at 335,567 to 339,379 10568
Locus Name Description Strand Phenotype
mRNA_2190 10558 K00059 fabG 3-oxoacyl-[acyl-carrier protein] reductase + cofit
mRNA_2191 10559 ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048 + cofit
mRNA_2192 10560 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 + cofit
mRNA_2193 10561 HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474 - cofit
mRNA_2194 10562 BLAST ER to Golgi transport-related protein, putative [Cryp... + insig.
mRNA_2195 10563 HMMPfam-Subtilase family-PF00082,HMMPfam-PA domain-PF02225,HMMPfam-Fn3-like domain (DUF1034)-PF06280,PRINTS-Subtilisin serine protease family (S8) signature-PR00723,ProSitePatterns-Serine proteases, subtilase family, aspartic acid active site.-PS00136,ProSitePatterns-Serine proteases, subtilase family, histidine active site.-PS00137,SUPERFAMILY--SSF52025,SUPERFAMILY--SSF52743 + insig.
mRNA_2196 10564 HMMPfam-Bromodomain associated-PF07524 - cofit
mRNA_2197 10565 K20042 FCHO F-BAR domain only protein + cofit
mRNA_2198 10566 Hypothetical Protein + insig.
mRNA_2199 10567 K05724 FGD5_6 FYVE, RhoGEF and PH domain containing 5/6 + insig.
mRNA_2200 10568 K11423 SETD2, SET2 histone-lysine N-methyltransferase SETD2 - cofit

Or browse nearby genes

Or see the comparative fitness browser