Gene info for mRNA_3004 in Rhodosporidium toruloides IFO0880

Name: 11372
Annotation: K12624 LSM5 U6 snRNA-associated Sm-like protein LSm5
Type 1: Protein-coding gene
Located on scaffold scaffold_16, - strand, nucleotides 53,581 to 54,123
See nucleotide sequence around mRNA_3004 or for all of scaffold scaffold_16

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 11367 and 11368 are separated by 371 nucleotides11368 and 11369 are separated by 292 nucleotides11369 and 11370 are separated by 43 nucleotides11370 and 11371 are separated by 586 nucleotides11371 and 11372 are separated by 166 nucleotides11372 and 11373 are separated by 630 nucleotides11373 and 11374 are separated by 658 nucleotides11374 and 11375 are separated by 269 nucleotides11375 and 11376 are separated by 250 nucleotides11376 and 11377 are separated by 186 nucleotides mRNA_2999: 11367 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 43,195 to 45,486 11367 mRNA_3000: 11368 - K15528 FAAH fatty acid amide hydrolase, at 45,858 to 47,909 11368 mRNA_3001: 11369 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 48,202 to 49,332 11369 mRNA_3002: 11370 - HMMPfam-Fungal specific transcription factor domain-PF11951, at 49,376 to 50,038 11370 mRNA_3003: 11371 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 50,625 to 53,414 11371 mRNA_3004: 11372 - K12624 LSM5 U6 snRNA-associated Sm-like protein LSm5, at 53,581 to 54,123 11372 mRNA_3005: 11373 - K19708 PTC6, AUP1 protein phosphatase PTC6, at 54,754 to 56,074 11373 mRNA_3006: 11374 - K03259 EIF4E translation initiation factor 4E, at 56,733 to 57,511 11374 mRNA_3007: 11375 - K15119 SLC25A39_40 solute carrier family 25, member 39/40, at 57,781 to 59,867 11375 mRNA_3008: 11376 - HMMPfam-Inositol hexakisphosphate-PF14566,SUPERFAMILY--SSF52799, at 60,118 to 65,560 11376 mRNA_3009: 11377 - Hypothetical Protein, at 65,747 to 66,498 11377
Locus Name Description Strand Phenotype
mRNA_2999 11367 KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) - cofit
mRNA_3000 11368 K15528 FAAH fatty acid amide hydrolase + cofit
mRNA_3001 11369 ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 + insig.
mRNA_3002 11370 HMMPfam-Fungal specific transcription factor domain-PF11951 + cofit
mRNA_3003 11371 ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701 + cofit
mRNA_3004 11372 K12624 LSM5 U6 snRNA-associated Sm-like protein LSm5 - no data
mRNA_3005 11373 K19708 PTC6, AUP1 protein phosphatase PTC6 + cofit
mRNA_3006 11374 K03259 EIF4E translation initiation factor 4E - cofit
mRNA_3007 11375 K15119 SLC25A39_40 solute carrier family 25, member 39/40 + no data
mRNA_3008 11376 HMMPfam-Inositol hexakisphosphate-PF14566,SUPERFAMILY--SSF52799 - insig.
mRNA_3009 11377 Hypothetical Protein - cofit

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