Gene info for mRNA_3079 in Rhodosporidium toruloides IFO0880

Name: 11447
Annotation: HMMPfam-DNA polymerase Ligase (LigD)-PF13298
Type 1: Protein-coding gene
Located on scaffold scaffold_16, + strand, nucleotides 270,913 to 272,289
See nucleotide sequence around mRNA_3079 or for all of scaffold scaffold_16

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 11442 and 11443 are separated by 218 nucleotides11443 and 11444 are separated by 1326 nucleotides11444 and 11445 are separated by 29 nucleotides11445 and 11446 are separated by 175 nucleotides11446 and 11447 are separated by 384 nucleotides11447 and 11448 are separated by 272 nucleotides11448 and 11449 are separated by 691 nucleotides11449 and 11450 are separated by 386 nucleotides11450 and 11451 are separated by 2093 nucleotides11451 and 11452 are separated by 123 nucleotides mRNA_3074: 11442 - KOG4650 Predicted steroid reductase, at 250,206 to 251,968 11442 mRNA_3075: 11443 - K07652 vicK two-component system, OmpR family, sensor histidine kinase VicK, at 252,187 to 260,484 11443 mRNA_3076: 11444 - KOG4497 Uncharacterized conserved protein WDR8, contains WD repeats, at 261,811 to 264,179 11444 mRNA_3077: 11445 - K07542 PIGV phosphatidylinositol glycan, class V, at 264,209 to 265,729 11445 mRNA_3078: 11446 - K01613 psd, PISD phosphatidylserine decarboxylase, at 265,905 to 270,528 11446 mRNA_3079: 11447 - HMMPfam-DNA polymerase Ligase (LigD)-PF13298, at 270,913 to 272,289 11447 mRNA_3080: 11448 - HMMPfam-Ferritin-like domain-PF13668,SUPERFAMILY--SSF47240, at 272,562 to 274,087 11448 mRNA_3081: 11449 - KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins, at 274,779 to 278,054 11449 mRNA_3082: 11450 - K09510 DNAJB4 DnaJ homolog subfamily B member 4, at 278,441 to 278,932 11450 mRNA_3083: 11451 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SUPERFAMILY--SSF57959, at 281,026 to 282,865 11451 mRNA_3084: 11452 - Hypothetical Protein, at 282,989 to 283,312 11452
Locus Name Description Strand Phenotype
mRNA_3074 11442 KOG4650 Predicted steroid reductase - cofit
mRNA_3075 11443 K07652 vicK two-component system, OmpR family, sensor histidine kinase VicK - cofit
mRNA_3076 11444 KOG4497 Uncharacterized conserved protein WDR8, contains WD repeats + cofit
mRNA_3077 11445 K07542 PIGV phosphatidylinositol glycan, class V - cofit
mRNA_3078 11446 K01613 psd, PISD phosphatidylserine decarboxylase - cofit
mRNA_3079 11447 HMMPfam-DNA polymerase Ligase (LigD)-PF13298 + cofit
mRNA_3080 11448 HMMPfam-Ferritin-like domain-PF13668,SUPERFAMILY--SSF47240 - insig.
mRNA_3081 11449 KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins - cofit
mRNA_3082 11450 K09510 DNAJB4 DnaJ homolog subfamily B member 4 - cofit
mRNA_3083 11451 HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SUPERFAMILY--SSF57959 - cofit
mRNA_3084 11452 Hypothetical Protein - cofit

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