Gene info for mRNA_3084 in Rhodosporidium toruloides IFO0880

Name: 11452
Annotation: Hypothetical Protein
Type 1: Protein-coding gene
Located on scaffold scaffold_16, - strand, nucleotides 282,989 to 283,312
See nucleotide sequence around mRNA_3084 or for all of scaffold scaffold_16

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 11447 and 11448 are separated by 272 nucleotides11448 and 11449 are separated by 691 nucleotides11449 and 11450 are separated by 386 nucleotides11450 and 11451 are separated by 2093 nucleotides11451 and 11452 are separated by 123 nucleotides11452 and 11453 are separated by 1055 nucleotides11453 and 11454 are separated by 731 nucleotides11454 and 11455 are separated by 596 nucleotides11455 and 11456 are separated by 192 nucleotides11456 and 11457 overlap by 8 nucleotides mRNA_3079: 11447 - HMMPfam-DNA polymerase Ligase (LigD)-PF13298, at 270,913 to 272,289 11447 mRNA_3080: 11448 - HMMPfam-Ferritin-like domain-PF13668,SUPERFAMILY--SSF47240, at 272,562 to 274,087 11448 mRNA_3081: 11449 - KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins, at 274,779 to 278,054 11449 mRNA_3082: 11450 - K09510 DNAJB4 DnaJ homolog subfamily B member 4, at 278,441 to 278,932 11450 mRNA_3083: 11451 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SUPERFAMILY--SSF57959, at 281,026 to 282,865 11451 mRNA_3084: 11452 - Hypothetical Protein, at 282,989 to 283,312 11452 mRNA_3085: 11453 - K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit, at 284,368 to 286,217 11453 mRNA_3086: 11454 - K03136 TFIIE1, GTF2E1, TFA1, tfe transcription initiation factor TFIIE subunit alpha, at 286,949 to 288,955 11454 mRNA_3087: 11455 - HMMPfam-haloacid dehalogenase-like hydrolase-PF12710,SUPERFAMILY--SSF56784,TIGRFAM-HAD-SF-IB HAD phosphoserine phosphatase-like hydrolase, family IB-TIGR01488,TIGRFAM-DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase-TIGR01489, at 289,552 to 290,619 11455 mRNA_3088: 11456 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 290,812 to 293,862 11456 mRNA_3089: 11457 - BLAST Rho GTPase-activating protein 30 [Larimichthys crocea], at 293,855 to 294,427 11457
Locus Name Description Strand Phenotype
mRNA_3079 11447 HMMPfam-DNA polymerase Ligase (LigD)-PF13298 + cofit
mRNA_3080 11448 HMMPfam-Ferritin-like domain-PF13668,SUPERFAMILY--SSF47240 - insig.
mRNA_3081 11449 KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins - cofit
mRNA_3082 11450 K09510 DNAJB4 DnaJ homolog subfamily B member 4 - cofit
mRNA_3083 11451 HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SUPERFAMILY--SSF57959 - cofit
mRNA_3084 11452 Hypothetical Protein - cofit
mRNA_3085 11453 K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit + cofit
mRNA_3086 11454 K03136 TFIIE1, GTF2E1, TFA1, tfe transcription initiation factor TFIIE subunit alpha - insig.
mRNA_3087 11455 HMMPfam-haloacid dehalogenase-like hydrolase-PF12710,SUPERFAMILY--SSF56784,TIGRFAM-HAD-SF-IB HAD phosphoserine phosphatase-like hydrolase, family IB-TIGR01488,TIGRFAM-DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase-TIGR01489 + cofit
mRNA_3088 11456 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 + insig.
mRNA_3089 11457 BLAST Rho GTPase-activating protein 30 [Larimichthys crocea] + cofit

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