Gene info for mRNA_3176 in Rhodosporidium toruloides IFO0880

Name: 11544
Annotation: K17301 COPB1, SEC26 coatomer subunit beta
Type 1: Protein-coding gene
Located on scaffold scaffold_17, + strand, nucleotides 17,776 to 21,807
See nucleotide sequence around mRNA_3176 or for all of scaffold scaffold_17

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 11539 and 11540 are separated by 562 nucleotides11540 and 11541 are separated by 249 nucleotides11541 and 11542 are separated by 481 nucleotides11542 and 11543 are separated by 446 nucleotides11543 and 11544 are separated by 369 nucleotides11544 and 11545 are separated by 277 nucleotides11545 and 11546 are separated by 468 nucleotides11546 and 11547 are separated by 243 nucleotides11547 and 11548 are separated by 795 nucleotides11548 and 11549 are separated by 332 nucleotides mRNA_3171: 11539 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048, at 4,085 to 5,766 11539 mRNA_3172: 11540 - Hypothetical Protein, at 6,329 to 7,697 11540 mRNA_3173: 11541 - K09497 CCT5 T-complex protein 1 subunit epsilon, at 7,947 to 10,272 11541 mRNA_3174: 11542 - K00953 FLAD1 FAD synthetase, at 10,754 to 11,960 11542 mRNA_3175: 11543 - K01191 E3.2.1.24 alpha-mannosidase, at 12,407 to 17,406 11543 mRNA_3176: 11544 - K17301 COPB1, SEC26 coatomer subunit beta, at 17,776 to 21,807 11544 mRNA_3177: 11545 - KOG2164 Predicted E3 ubiquitin ligase, at 22,085 to 24,622 11545 mRNA_3178: 11546 - KOG4561 Uncharacterized conserved protein, contains TBC domain, at 25,091 to 26,696 11546 mRNA_3179: 11547 - Hypothetical Protein, at 26,940 to 28,412 11547 mRNA_3180: 11548 - ProSitePatterns-Zinc finger RanBP2-type signature.-PS01358,SUPERFAMILY--SSF90209, at 29,208 to 30,655 11548 mRNA_3181: 11549 - KOG4842 Protein involved in sister chromatid separation and/or segregation, at 30,988 to 32,695 11549
Locus Name Description Strand Phenotype
mRNA_3171 11539 ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048 - cofit
mRNA_3172 11540 Hypothetical Protein + cofit
mRNA_3173 11541 K09497 CCT5 T-complex protein 1 subunit epsilon - no data
mRNA_3174 11542 K00953 FLAD1 FAD synthetase + no data
mRNA_3175 11543 K01191 E3.2.1.24 alpha-mannosidase - cofit
mRNA_3176 11544 K17301 COPB1, SEC26 coatomer subunit beta + no data
mRNA_3177 11545 KOG2164 Predicted E3 ubiquitin ligase + cofit
mRNA_3178 11546 KOG4561 Uncharacterized conserved protein, contains TBC domain - cofit
mRNA_3179 11547 Hypothetical Protein + no data
mRNA_3180 11548 ProSitePatterns-Zinc finger RanBP2-type signature.-PS01358,SUPERFAMILY--SSF90209 - cofit
mRNA_3181 11549 KOG4842 Protein involved in sister chromatid separation and/or segregation - insig.

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