Gene info for mRNA_3290 in Rhodosporidium toruloides IFO0880

Name: 11658
Annotation: HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701
Type 1: Protein-coding gene
Located on scaffold scaffold_17, + strand, nucleotides 304,969 to 308,540
See nucleotide sequence around mRNA_3290 or for all of scaffold scaffold_17

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 11653 and 11654 are separated by 639 nucleotides11654 and 11655 are separated by 269 nucleotides11655 and 11656 are separated by 189 nucleotides11656 and 11657 are separated by 296 nucleotides11657 and 11658 are separated by 2423 nucleotides11658 and 11659 are separated by 364 nucleotides11659 and 11660 are separated by 584 nucleotides11660 and 11661 are separated by 6412 nucleotides11661 and 11662 are separated by 13 nucleotides11662 and 11663 are separated by 107 nucleotides mRNA_3285: 11653 - KOG2069 Golgi transport complex subunit, at 293,945 to 296,560 11653 mRNA_3286: 11654 - Hypothetical Protein, at 297,200 to 297,720 11654 mRNA_3287: 11655 - Hypothetical Protein, at 297,990 to 298,361 11655 mRNA_3288: 11656 - K03240 EIF2B5 translation initiation factor eIF-2B subunit epsilon, at 298,551 to 301,179 11656 mRNA_3289: 11657 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 301,476 to 302,545 11657 mRNA_3290: 11658 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 304,969 to 308,540 11658 mRNA_3291: 11659 - BLAST expressed protein [Schizophyllum commune H4-8], at 308,905 to 310,428 11659 mRNA_3292: 11660 - KOG1339 Aspartyl protease, at 311,013 to 311,790 11660 mRNA_3293: 11661 - K01440 PNC1 nicotinamidase, at 318,203 to 319,692 11661 mRNA_3294: 11662 - K20368 CNIH, ERV14 protein cornichon, at 319,706 to 321,575 11662 mRNA_3295: 11663 - K14324 SAP18 histone deacetylase complex subunit SAP18, at 321,683 to 322,724 11663
Locus Name Description Strand Phenotype
mRNA_3285 11653 KOG2069 Golgi transport complex subunit + cofit
mRNA_3286 11654 Hypothetical Protein + cofit
mRNA_3287 11655 Hypothetical Protein - insig.
mRNA_3288 11656 K03240 EIF2B5 translation initiation factor eIF-2B subunit epsilon + no data
mRNA_3289 11657 ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257 - no data
mRNA_3290 11658 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701 + cofit
mRNA_3291 11659 BLAST expressed protein [Schizophyllum commune H4-8] - insig.
mRNA_3292 11660 KOG1339 Aspartyl protease - cofit
mRNA_3293 11661 K01440 PNC1 nicotinamidase + cofit
mRNA_3294 11662 K20368 CNIH, ERV14 protein cornichon - no data
mRNA_3295 11663 K14324 SAP18 histone deacetylase complex subunit SAP18 + cofit

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