Gene info for mRNA_3420 in Rhodosporidium toruloides IFO0880

Name: 11788
Annotation: HMMPfam-ATP dependent DNA ligase domain-PF01068,HMMPfam-DNA ligase N terminus-PF04675,ProSiteProfiles-ATP-dependent DNA ligase family profile.-PS50160,SUPERFAMILY--SSF56091
Type 1: Protein-coding gene
Located on scaffold scaffold_18, + strand, nucleotides 53,705 to 57,912
See nucleotide sequence around mRNA_3420 or for all of scaffold scaffold_18

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 11783 and 11784 are separated by 1723 nucleotides11784 and 11785 are separated by 233 nucleotides11785 and 11786 are separated by 470 nucleotides11786 and 11787 are separated by 1100 nucleotides11787 and 11788 are separated by 390 nucleotides11788 and 11789 are separated by 443 nucleotides11789 and 11790 are separated by 119 nucleotides11790 and 11791 are separated by 450 nucleotides11791 and 11792 are separated by 469 nucleotides11792 and 11793 are separated by 168 nucleotides mRNA_3415: 11783 - Hypothetical Protein, at 38,660 to 40,672 11783 mRNA_3416: 11784 - Hypothetical Protein, at 42,396 to 43,510 11784 mRNA_3417: 11785 - Hypothetical Protein, at 43,744 to 46,912 11785 mRNA_3418: 11786 - KOG1502 Flavonol reductase/cinnamoyl-CoA reductase, at 47,383 to 48,909 11786 mRNA_3419: 11787 - K01120 cpdP 3',5'-cyclic-nucleotide phosphodiesterase, at 50,010 to 53,314 11787 mRNA_3420: 11788 - HMMPfam-ATP dependent DNA ligase domain-PF01068,HMMPfam-DNA ligase N terminus-PF04675,ProSiteProfiles-ATP-dependent DNA ligase family profile.-PS50160,SUPERFAMILY--SSF56091, at 53,705 to 57,912 11788 mRNA_3421: 11789 - K14297 NUP98, ADAR2, NUP116 nuclear pore complex protein Nup98-Nup96, at 58,356 to 61,690 11789 mRNA_3422: 11790 - KOG2882 p-Nitrophenyl phosphatase, at 61,810 to 63,146 11790 mRNA_3423: 11791 - KOG3655 Drebrins and related actin binding proteins, at 63,597 to 64,502 11791 mRNA_3424: 11792 - Hypothetical Protein, at 64,972 to 67,736 11792 mRNA_3425: 11793 - K00789 metK S-adenosylmethionine synthetase, at 67,905 to 69,207 11793
Locus Name Description Strand Phenotype
mRNA_3415 11783 Hypothetical Protein - cofit
mRNA_3416 11784 Hypothetical Protein + cofit
mRNA_3417 11785 Hypothetical Protein - insig.
mRNA_3418 11786 KOG1502 Flavonol reductase/cinnamoyl-CoA reductase + insig.
mRNA_3419 11787 K01120 cpdP 3',5'-cyclic-nucleotide phosphodiesterase + strong
mRNA_3420 11788 HMMPfam-ATP dependent DNA ligase domain-PF01068,HMMPfam-DNA ligase N terminus-PF04675,ProSiteProfiles-ATP-dependent DNA ligase family profile.-PS50160,SUPERFAMILY--SSF56091 + cofit
mRNA_3421 11789 K14297 NUP98, ADAR2, NUP116 nuclear pore complex protein Nup98-Nup96 + no data
mRNA_3422 11790 KOG2882 p-Nitrophenyl phosphatase - cofit
mRNA_3423 11791 KOG3655 Drebrins and related actin binding proteins + cofit
mRNA_3424 11792 Hypothetical Protein + cofit
mRNA_3425 11793 K00789 metK S-adenosylmethionine synthetase - cofit

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