Gene info for mRNA_3448 in Rhodosporidium toruloides IFO0880

Name: 11816
Annotation: HMMPfam-Peptidase M50B-like-PF13398
Type 1: Protein-coding gene
Located on scaffold scaffold_18, + strand, nucleotides 125,268 to 126,548
See nucleotide sequence around mRNA_3448 or for all of scaffold scaffold_18

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 11811 and 11812 are separated by 222 nucleotides11812 and 11813 are separated by 843 nucleotides11813 and 11814 are separated by 653 nucleotides11814 and 11815 are separated by 377 nucleotides11815 and 11816 are separated by 258 nucleotides11816 and 11817 are separated by 82 nucleotides11817 and 11818 are separated by 762 nucleotides11818 and 11819 are separated by 622 nucleotides11819 and 11820 are separated by 85 nucleotides11820 and 11821 are separated by 313 nucleotides mRNA_3443: 11811 - K06694 PSMD10 26S proteasome non-ATPase regulatory subunit 10, at 116,448 to 118,253 11811 mRNA_3444: 11812 - Hypothetical Protein, at 118,476 to 119,519 11812 mRNA_3445: 11813 - HMMPfam-BRO1-like domain-PF03097,ProSiteProfiles-BRO1 domain profile.-PS51180,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SMART-BRO1-like domain-SM01041, at 120,363 to 121,884 11813 mRNA_3446: 11814 - K07393 ECM4 putative glutathione S-transferase, at 122,538 to 123,846 11814 mRNA_3447: 11815 - HMMPfam-AhpC/TSA antioxidant enzyme-PF13911,SUPERFAMILY--SSF52833, at 124,224 to 125,009 11815 mRNA_3448: 11816 - HMMPfam-Peptidase M50B-like-PF13398, at 125,268 to 126,548 11816 mRNA_3449: 11817 - HMMPfam-Integral peroxisomal membrane peroxin-PF06398, at 126,631 to 128,651 11817 mRNA_3450: 11818 - K20131 RABGEF1 Rab5 GDP/GTP exchange factor, at 129,414 to 132,360 11818 mRNA_3451: 11819 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 132,983 to 136,040 11819 mRNA_3452: 11820 - HMMPfam-Protein of unknown function (DUF2454)-PF10521,SUPERFAMILY--SSF48371, at 136,126 to 138,036 11820 mRNA_3453: 11821 - KOG2959 Transcriptional regulator, at 138,350 to 139,548 11821
Locus Name Description Strand Phenotype
mRNA_3443 11811 K06694 PSMD10 26S proteasome non-ATPase regulatory subunit 10 + cofit
mRNA_3444 11812 Hypothetical Protein - cofit
mRNA_3445 11813 HMMPfam-BRO1-like domain-PF03097,ProSiteProfiles-BRO1 domain profile.-PS51180,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SMART-BRO1-like domain-SM01041 - cofit
mRNA_3446 11814 K07393 ECM4 putative glutathione S-transferase + cofit
mRNA_3447 11815 HMMPfam-AhpC/TSA antioxidant enzyme-PF13911,SUPERFAMILY--SSF52833 + no data
mRNA_3448 11816 HMMPfam-Peptidase M50B-like-PF13398 + cofit
mRNA_3449 11817 HMMPfam-Integral peroxisomal membrane peroxin-PF06398 - no data
mRNA_3450 11818 K20131 RABGEF1 Rab5 GDP/GTP exchange factor - cofit
mRNA_3451 11819 HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701 + cofit
mRNA_3452 11820 HMMPfam-Protein of unknown function (DUF2454)-PF10521,SUPERFAMILY--SSF48371 - no data
mRNA_3453 11821 KOG2959 Transcriptional regulator + cofit

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