Gene info for mRNA_3454 in Rhodosporidium toruloides IFO0880

Name: 11822
Annotation: SUPERFAMILY--SSF52047
Type 1: Protein-coding gene
Located on scaffold scaffold_18, - strand, nucleotides 139,645 to 140,934
See nucleotide sequence around mRNA_3454 or for all of scaffold scaffold_18

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 11817 and 11818 are separated by 762 nucleotides11818 and 11819 are separated by 622 nucleotides11819 and 11820 are separated by 85 nucleotides11820 and 11821 are separated by 313 nucleotides11821 and 11822 are separated by 96 nucleotides11822 and 11823 are separated by 93 nucleotides11823 and 11824 are separated by 242 nucleotides11824 and 11825 are separated by 269 nucleotides11825 and 11826 are separated by 117 nucleotides11826 and 11827 are separated by 158 nucleotides mRNA_3449: 11817 - HMMPfam-Integral peroxisomal membrane peroxin-PF06398, at 126,631 to 128,651 11817 mRNA_3450: 11818 - K20131 RABGEF1 Rab5 GDP/GTP exchange factor, at 129,414 to 132,360 11818 mRNA_3451: 11819 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 132,983 to 136,040 11819 mRNA_3452: 11820 - HMMPfam-Protein of unknown function (DUF2454)-PF10521,SUPERFAMILY--SSF48371, at 136,126 to 138,036 11820 mRNA_3453: 11821 - KOG2959 Transcriptional regulator, at 138,350 to 139,548 11821 mRNA_3454: 11822 - SUPERFAMILY--SSF52047, at 139,645 to 140,934 11822 mRNA_3455: 11823 - K03424 tatD TatD DNase family protein, at 141,028 to 142,309 11823 mRNA_3456: 11824 - HMMPfam-Family of unknown function (DUF500)-PF04366, at 142,552 to 143,804 11824 mRNA_3457: 11825 - KOG1843 Uncharacterized conserved protein, at 144,074 to 145,634 11825 mRNA_3458: 11826 - K03857 PIGA, GPI3 phosphatidylinositol glycan, class A, at 145,752 to 147,635 11826 mRNA_3459: 11827 - ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 147,794 to 151,467 11827
Locus Name Description Strand Phenotype
mRNA_3449 11817 HMMPfam-Integral peroxisomal membrane peroxin-PF06398 - no data
mRNA_3450 11818 K20131 RABGEF1 Rab5 GDP/GTP exchange factor - cofit
mRNA_3451 11819 HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701 + cofit
mRNA_3452 11820 HMMPfam-Protein of unknown function (DUF2454)-PF10521,SUPERFAMILY--SSF48371 - no data
mRNA_3453 11821 KOG2959 Transcriptional regulator + cofit
mRNA_3454 11822 SUPERFAMILY--SSF52047 - insig.
mRNA_3455 11823 K03424 tatD TatD DNase family protein + cofit
mRNA_3456 11824 HMMPfam-Family of unknown function (DUF500)-PF04366 + cofit
mRNA_3457 11825 KOG1843 Uncharacterized conserved protein + insig.
mRNA_3458 11826 K03857 PIGA, GPI3 phosphatidylinositol glycan, class A - no data
mRNA_3459 11827 ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044 + insig.

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