Gene info for mRNA_3455 in Rhodosporidium toruloides IFO0880

Name: 11823
Annotation: K03424 tatD TatD DNase family protein
Type 1: Protein-coding gene
Located on scaffold scaffold_18, + strand, nucleotides 141,028 to 142,309
See nucleotide sequence around mRNA_3455 or for all of scaffold scaffold_18

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 11818 and 11819 are separated by 622 nucleotides11819 and 11820 are separated by 85 nucleotides11820 and 11821 are separated by 313 nucleotides11821 and 11822 are separated by 96 nucleotides11822 and 11823 are separated by 93 nucleotides11823 and 11824 are separated by 242 nucleotides11824 and 11825 are separated by 269 nucleotides11825 and 11826 are separated by 117 nucleotides11826 and 11827 are separated by 158 nucleotides11827 and 11828 are separated by 156 nucleotides mRNA_3450: 11818 - K20131 RABGEF1 Rab5 GDP/GTP exchange factor, at 129,414 to 132,360 11818 mRNA_3451: 11819 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 132,983 to 136,040 11819 mRNA_3452: 11820 - HMMPfam-Protein of unknown function (DUF2454)-PF10521,SUPERFAMILY--SSF48371, at 136,126 to 138,036 11820 mRNA_3453: 11821 - KOG2959 Transcriptional regulator, at 138,350 to 139,548 11821 mRNA_3454: 11822 - SUPERFAMILY--SSF52047, at 139,645 to 140,934 11822 mRNA_3455: 11823 - K03424 tatD TatD DNase family protein, at 141,028 to 142,309 11823 mRNA_3456: 11824 - HMMPfam-Family of unknown function (DUF500)-PF04366, at 142,552 to 143,804 11824 mRNA_3457: 11825 - KOG1843 Uncharacterized conserved protein, at 144,074 to 145,634 11825 mRNA_3458: 11826 - K03857 PIGA, GPI3 phosphatidylinositol glycan, class A, at 145,752 to 147,635 11826 mRNA_3459: 11827 - ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 147,794 to 151,467 11827 mRNA_3460: 11828 - HMMPfam-Fasciclin domain-PF02469,SUPERFAMILY--SSF82153, at 151,624 to 153,827 11828
Locus Name Description Strand Phenotype
mRNA_3450 11818 K20131 RABGEF1 Rab5 GDP/GTP exchange factor - cofit
mRNA_3451 11819 HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701 + cofit
mRNA_3452 11820 HMMPfam-Protein of unknown function (DUF2454)-PF10521,SUPERFAMILY--SSF48371 - no data
mRNA_3453 11821 KOG2959 Transcriptional regulator + cofit
mRNA_3454 11822 SUPERFAMILY--SSF52047 - insig.
mRNA_3455 11823 K03424 tatD TatD DNase family protein + cofit
mRNA_3456 11824 HMMPfam-Family of unknown function (DUF500)-PF04366 + cofit
mRNA_3457 11825 KOG1843 Uncharacterized conserved protein + insig.
mRNA_3458 11826 K03857 PIGA, GPI3 phosphatidylinositol glycan, class A - no data
mRNA_3459 11827 ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044 + insig.
mRNA_3460 11828 HMMPfam-Fasciclin domain-PF02469,SUPERFAMILY--SSF82153 + cofit

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