Gene info for mRNA_3504 in Rhodosporidium toruloides IFO0880

Name: 11872
Annotation: HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701
Type 1: Protein-coding gene
Located on scaffold scaffold_18, - strand, nucleotides 255,381 to 257,476
See nucleotide sequence around mRNA_3504 or for all of scaffold scaffold_18

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 11867 and 11868 are separated by 703 nucleotides11868 and 11869 are separated by 405 nucleotides11869 and 11870 are separated by 46 nucleotides11870 and 11871 are separated by 404 nucleotides11871 and 11872 are separated by 1176 nucleotides11872 and 11873 are separated by 329 nucleotides11873 and 11874 are separated by 432 nucleotides11874 and 11875 are separated by 214 nucleotides11875 and 11876 are separated by 198 nucleotides11876 and 11877 are separated by 181 nucleotides mRNA_3499: 11867 - K00231 PPOX, hemY oxygen-dependent protoporphyrinogen oxidase, at 243,095 to 244,996 11867 mRNA_3500: 11868 - KOG2519 5'-3' exonuclease, at 245,700 to 248,074 11868 mRNA_3501: 11869 - KOG3791 Predicted RNA-binding protein involved in translational regulation, at 248,480 to 250,835 11869 mRNA_3502: 11870 - Hypothetical Protein, at 250,882 to 251,460 11870 mRNA_3503: 11871 - K03457 TC.NCS1 nucleobase-cation symporter-1, NCS1 family, at 251,865 to 254,204 11871 mRNA_3504: 11872 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 255,381 to 257,476 11872 mRNA_3505: 11873 - KOG3699 Cytoskeletal protein Adducin, at 257,806 to 259,201 11873 mRNA_3506: 11874 - HMMPfam-Asp/Glu/Hydantoin racemase-PF01177, at 259,634 to 260,419 11874 mRNA_3507: 11875 - K12251 aguB N-carbamoylputrescine amidase, at 260,634 to 261,961 11875 mRNA_3508: 11876 - K00273 DAO, aao D-amino-acid oxidase, at 262,160 to 263,731 11876 mRNA_3509: 11877 - K01464 DPYS, dht, hydA dihydropyrimidinase, at 263,913 to 265,913 11877
Locus Name Description Strand Phenotype
mRNA_3499 11867 K00231 PPOX, hemY oxygen-dependent protoporphyrinogen oxidase - no data
mRNA_3500 11868 KOG2519 5'-3' exonuclease + cofit
mRNA_3501 11869 KOG3791 Predicted RNA-binding protein involved in translational regulation - cofit
mRNA_3502 11870 Hypothetical Protein - no data
mRNA_3503 11871 K03457 TC.NCS1 nucleobase-cation symporter-1, NCS1 family - cofit
mRNA_3504 11872 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 - cofit
mRNA_3505 11873 KOG3699 Cytoskeletal protein Adducin - cofit
mRNA_3506 11874 HMMPfam-Asp/Glu/Hydantoin racemase-PF01177 + cofit
mRNA_3507 11875 K12251 aguB N-carbamoylputrescine amidase - cofit
mRNA_3508 11876 K00273 DAO, aao D-amino-acid oxidase + cofit
mRNA_3509 11877 K01464 DPYS, dht, hydA dihydropyrimidinase - cofit

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