Gene info for mRNA_3571 in Rhodosporidium toruloides IFO0880

Name: 11939
Annotation: K03681 RRP40, EXOSC3 exosome complex component RRP40
Type 1: Protein-coding gene
Located on scaffold scaffold_2, - strand, nucleotides 77,591 to 78,625
See nucleotide sequence around mRNA_3571 or for all of scaffold scaffold_2

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 11934 and 11935 are separated by 567 nucleotides11935 and 11936 are separated by 180 nucleotides11936 and 11937 are separated by 238 nucleotides11937 and 11938 are separated by 89 nucleotides11938 and 11939 are separated by 687 nucleotides11939 and 11940 are separated by 479 nucleotides11940 and 11941 overlap by 4 nucleotides11941 and 11942 are separated by 558 nucleotides11942 and 11943 are separated by 670 nucleotides11943 and 11944 are separated by 468 nucleotides mRNA_3566: 11934 - HMMPfam-Opioid growth factor receptor (OGFr) conserved region-PF04664, at 68,325 to 69,478 11934 mRNA_3567: 11935 - KOG1760 Molecular chaperone Prefoldin, subunit 4, at 70,046 to 70,788 11935 mRNA_3568: 11936 - KOG4055 Uncharacterized conserved protein, at 70,969 to 72,030 11936 mRNA_3569: 11937 - BLAST rna recognition domain-containing protein [Colletotri..., at 72,269 to 75,186 11937 mRNA_3570: 11938 - HMMPfam-Eukaryotic aspartyl protease-PF00026,PRINTS-Pepsin (A1) aspartic protease family signature-PR00792,ProSitePatterns-Eukaryotic and viral aspartyl proteases active site.-PS00141,SUPERFAMILY--SSF50630, at 75,276 to 76,903 11938 mRNA_3571: 11939 - K03681 RRP40, EXOSC3 exosome complex component RRP40, at 77,591 to 78,625 11939 mRNA_3572: 11940 - K11314 TADA2A, ADA2 transcriptional adapter 2-alpha, at 79,105 to 81,061 11940 mRNA_3573: 11941 - SUPERFAMILY--SSF54928, at 81,058 to 83,632 11941 mRNA_3574: 11942 - ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 84,191 to 85,564 11942 mRNA_3575: 11943 - Hypothetical Protein, at 86,235 to 86,923 11943 mRNA_3576: 11944 - Hypothetical Protein, at 87,392 to 87,994 11944
Locus Name Description Strand Phenotype
mRNA_3566 11934 HMMPfam-Opioid growth factor receptor (OGFr) conserved region-PF04664 - cofit
mRNA_3567 11935 KOG1760 Molecular chaperone Prefoldin, subunit 4 - no data
mRNA_3568 11936 KOG4055 Uncharacterized conserved protein + no data
mRNA_3569 11937 BLAST rna recognition domain-containing protein [Colletotri... - cofit
mRNA_3570 11938 HMMPfam-Eukaryotic aspartyl protease-PF00026,PRINTS-Pepsin (A1) aspartic protease family signature-PR00792,ProSitePatterns-Eukaryotic and viral aspartyl proteases active site.-PS00141,SUPERFAMILY--SSF50630 - cofit
mRNA_3571 11939 K03681 RRP40, EXOSC3 exosome complex component RRP40 - no data
mRNA_3572 11940 K11314 TADA2A, ADA2 transcriptional adapter 2-alpha + no data
mRNA_3573 11941 SUPERFAMILY--SSF54928 + insig.
mRNA_3574 11942 ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928 + cofit
mRNA_3575 11943 Hypothetical Protein + cofit
mRNA_3576 11944 Hypothetical Protein - no data

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