Gene info for mRNA_3620 in Rhodosporidium toruloides IFO0880

Name: 11988
Annotation: K15777 DOPA 4,5-DOPA dioxygenase extradiol
Type 1: Protein-coding gene
Located on scaffold scaffold_2, + strand, nucleotides 181,762 to 183,020
See nucleotide sequence around mRNA_3620 or for all of scaffold scaffold_2

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 11983 and 11984 are separated by 364 nucleotides11984 and 11985 are separated by 748 nucleotides11985 and 11986 are separated by 676 nucleotides11986 and 11987 are separated by 288 nucleotides11987 and 11988 are separated by 306 nucleotides11988 and 11989 are separated by 183 nucleotides11989 and 11990 are separated by 534 nucleotides11990 and 11991 are separated by 1876 nucleotides11991 and 11992 are separated by 689 nucleotides11992 and 11993 are separated by 251 nucleotides mRNA_3615: 11983 - KOG3223 Uncharacterized conserved protein, at 171,403 to 172,846 11983 mRNA_3616: 11984 - K11600 RRP41, EXOSC4, SKI6 exosome complex component RRP41, at 173,211 to 174,376 11984 mRNA_3617: 11985 - KOG0254 Predicted transporter (major facilitator superfamily), at 175,125 to 177,580 11985 mRNA_3618: 11986 - HMMPfam-Cupin domain-PF07883,SUPERFAMILY--SSF51182, at 178,257 to 178,945 11986 mRNA_3619: 11987 - HMMPfam-X-Pro dipeptidyl-peptidase (S15 family)-PF02129,HMMPfam-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-PF08530,SMART-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-SM00939,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF53474,TIGRFAM-/NonD hydrolase CocE/NonD family protein-TIGR00976, at 179,234 to 181,455 11987 mRNA_3620: 11988 - K15777 DOPA 4,5-DOPA dioxygenase extradiol, at 181,762 to 183,020 11988 mRNA_3621: 11989 - K00252 GCDH, gcdH glutaryl-CoA dehydrogenase, at 183,204 to 185,483 11989 mRNA_3622: 11990 - KOG0254 Predicted transporter (major facilitator superfamily), at 186,018 to 188,381 11990 mRNA_3623: 11991 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 190,258 to 192,689 11991 mRNA_3624: 11992 - SUPERFAMILY--SSF52047, at 193,379 to 194,590 11992 mRNA_3625: 11993 - K01176 AMY, amyA, malS alpha-amylase, at 194,842 to 197,624 11993
Locus Name Description Strand Phenotype
mRNA_3615 11983 KOG3223 Uncharacterized conserved protein + no data
mRNA_3616 11984 K11600 RRP41, EXOSC4, SKI6 exosome complex component RRP41 - no data
mRNA_3617 11985 KOG0254 Predicted transporter (major facilitator superfamily) - cofit
mRNA_3618 11986 HMMPfam-Cupin domain-PF07883,SUPERFAMILY--SSF51182 - cofit
mRNA_3619 11987 HMMPfam-X-Pro dipeptidyl-peptidase (S15 family)-PF02129,HMMPfam-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-PF08530,SMART-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-SM00939,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF53474,TIGRFAM-/NonD hydrolase CocE/NonD family protein-TIGR00976 + cofit
mRNA_3620 11988 K15777 DOPA 4,5-DOPA dioxygenase extradiol + cofit
mRNA_3621 11989 K00252 GCDH, gcdH glutaryl-CoA dehydrogenase - cofit
mRNA_3622 11990 KOG0254 Predicted transporter (major facilitator superfamily) - cofit
mRNA_3623 11991 HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928 - cofit
mRNA_3624 11992 SUPERFAMILY--SSF52047 + cofit
mRNA_3625 11993 K01176 AMY, amyA, malS alpha-amylase - cofit

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