Gene info for mRNA_3628 in Rhodosporidium toruloides IFO0880

Name: 11996
Annotation: K10849 ERCC1 DNA excision repair protein ERCC-1
Type 1: Protein-coding gene
Located on scaffold scaffold_2, + strand, nucleotides 202,614 to 203,898
See nucleotide sequence around mRNA_3628 or for all of scaffold scaffold_2

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 11991 and 11992 are separated by 689 nucleotides11992 and 11993 are separated by 251 nucleotides11993 and 11994 are separated by 391 nucleotides11994 and 11995 are separated by 895 nucleotides11995 and 11996 are separated by 393 nucleotides11996 and 11997 are separated by 84 nucleotides11997 and 11998 are separated by 660 nucleotides11998 and 11999 are separated by 365 nucleotides11999 and 12000 are separated by 382 nucleotides12000 and 12001 are separated by 1483 nucleotides mRNA_3623: 11991 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 190,258 to 192,689 11991 mRNA_3624: 11992 - SUPERFAMILY--SSF52047, at 193,379 to 194,590 11992 mRNA_3625: 11993 - K01176 AMY, amyA, malS alpha-amylase, at 194,842 to 197,624 11993 mRNA_3626: 11994 - BLAST SH3 domain-containing protein [Rhizoctonia solani AG-..., at 198,016 to 198,652 11994 mRNA_3627: 11995 - SUPERFAMILY--SSF51110,SUPERFAMILY--SSF51126, at 199,548 to 202,220 11995 mRNA_3628: 11996 - K10849 ERCC1 DNA excision repair protein ERCC-1, at 202,614 to 203,898 11996 mRNA_3629: 11997 - Hypothetical Protein, at 203,983 to 204,971 11997 mRNA_3630: 11998 - Hypothetical Protein, at 205,632 to 206,590 11998 mRNA_3631: 11999 - Hypothetical Protein, at 206,956 to 207,306 11999 mRNA_3632: 12000 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 207,689 to 209,563 12000 mRNA_3633: 12001 - KOG1074 Transcriptional repressor SALM, at 211,047 to 213,295 12001
Locus Name Description Strand Phenotype
mRNA_3623 11991 HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928 - cofit
mRNA_3624 11992 SUPERFAMILY--SSF52047 + cofit
mRNA_3625 11993 K01176 AMY, amyA, malS alpha-amylase - cofit
mRNA_3626 11994 BLAST SH3 domain-containing protein [Rhizoctonia solani AG-... + cofit
mRNA_3627 11995 SUPERFAMILY--SSF51110,SUPERFAMILY--SSF51126 - cofit
mRNA_3628 11996 K10849 ERCC1 DNA excision repair protein ERCC-1 + cofit
mRNA_3629 11997 Hypothetical Protein + cofit
mRNA_3630 11998 Hypothetical Protein + cofit
mRNA_3631 11999 Hypothetical Protein - cofit
mRNA_3632 12000 HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112 - cofit
mRNA_3633 12001 KOG1074 Transcriptional repressor SALM + cofit

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