Gene info for mRNA_3739 in Rhodosporidium toruloides IFO0880

Name: 12107
Annotation: HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,ProSiteProfiles-Expansin, family-45 endoglucanase-like domain profile.-PS50842,SUPERFAMILY--SSF50685
Type 1: Protein-coding gene
Located on scaffold scaffold_2, + strand, nucleotides 468,433 to 469,585
See nucleotide sequence around mRNA_3739 or for all of scaffold scaffold_2

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 12102 and 12103 are separated by 152 nucleotides12103 and 12104 are separated by 247 nucleotides12104 and 12105 are separated by 269 nucleotides12105 and 12106 are separated by 258 nucleotides12106 and 12107 are separated by 533 nucleotides12107 and 12108 are separated by 313 nucleotides12108 and 12109 overlap by 8 nucleotides12109 and 12110 are separated by 566 nucleotides12110 and 12111 are separated by 310 nucleotides12111 and 12112 are separated by 1046 nucleotides mRNA_3734: 12102 - Interpro Protein HRI1, at 460,954 to 461,748 12102 mRNA_3735: 12103 - KOG4842 Protein involved in sister chromatid separation and/or segregation, at 461,901 to 463,089 12103 mRNA_3736: 12104 - K00573 E2.1.1.77, pcm protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 463,337 to 464,527 12104 mRNA_3737: 12105 - BLAST TPR-2 domain protein [Rhizoctonia solani AG-3 Rhs1AP], at 464,797 to 466,425 12105 mRNA_3738: 12106 - K06689 UBE2D, UBC4, UBC5 ubiquitin-conjugating enzyme E2 D, at 466,684 to 467,899 12106 mRNA_3739: 12107 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,ProSiteProfiles-Expansin, family-45 endoglucanase-like domain profile.-PS50842,SUPERFAMILY--SSF50685, at 468,433 to 469,585 12107 mRNA_3740: 12108 - Hypothetical Protein, at 469,899 to 470,347 12108 mRNA_3741: 12109 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 470,340 to 473,925 12109 mRNA_3742: 12110 - SMART-Parallel beta-helix repeats-SM00710,SUPERFAMILY--SSF51126, at 474,492 to 476,469 12110 mRNA_3743: 12111 - K15289 SLC35F5 solute carrier family 35, member F5, at 476,780 to 478,513 12111 mRNA_3744: 12112 - KOG0955 PHD finger protein BR140/LIN-49, at 479,560 to 485,967 12112
Locus Name Description Strand Phenotype
mRNA_3734 12102 Interpro Protein HRI1 - cofit
mRNA_3735 12103 KOG4842 Protein involved in sister chromatid separation and/or segregation + cofit
mRNA_3736 12104 K00573 E2.1.1.77, pcm protein-L-isoaspartate(D-aspartate) O-methyltransferase - cofit
mRNA_3737 12105 BLAST TPR-2 domain protein [Rhizoctonia solani AG-3 Rhs1AP] + cofit
mRNA_3738 12106 K06689 UBE2D, UBC4, UBC5 ubiquitin-conjugating enzyme E2 D + no data
mRNA_3739 12107 HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,ProSiteProfiles-Expansin, family-45 endoglucanase-like domain profile.-PS50842,SUPERFAMILY--SSF50685 + cofit
mRNA_3740 12108 Hypothetical Protein + cofit
mRNA_3741 12109 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 + cofit
mRNA_3742 12110 SMART-Parallel beta-helix repeats-SM00710,SUPERFAMILY--SSF51126 + cofit
mRNA_3743 12111 K15289 SLC35F5 solute carrier family 35, member F5 - cofit
mRNA_3744 12112 KOG0955 PHD finger protein BR140/LIN-49 + cofit

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