Gene info for mRNA_3844 in Rhodosporidium toruloides IFO0880

Name: 12212
Annotation: HMMPfam-Afadin- and alpha -actinin-Binding-PF11559
Type 1: Protein-coding gene
Located on scaffold scaffold_2, - strand, nucleotides 723,329 to 725,612
See nucleotide sequence around mRNA_3844 or for all of scaffold scaffold_2

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 12207 and 12208 are separated by 295 nucleotides12208 and 12209 are separated by 262 nucleotides12209 and 12210 are separated by 260 nucleotides12210 and 12211 are separated by 156 nucleotides12211 and 12212 are separated by 115 nucleotides12212 and 12213 are separated by 472 nucleotides12213 and 12214 are separated by 988 nucleotides12214 and 12215 are separated by 1804 nucleotides12215 and 12216 are separated by 513 nucleotides12216 and 12217 are separated by 360 nucleotides mRNA_3839: 12207 - BLAST E3 ubiquitin-protein ligase RNF213 [Mus musculus] [Rh..., at 713,356 to 714,077 12207 mRNA_3840: 12208 - K18849 BMT2 25S rRNA (adenine2142-N1)-methyltransferase, at 714,373 to 715,825 12208 mRNA_3841: 12209 - K13431 SRPR signal recognition particle receptor subunit alpha, at 716,088 to 718,591 12209 mRNA_3842: 12210 - K18179 COA6 cytochrome c oxidase assembly factor 6, at 718,852 to 719,357 12210 mRNA_3843: 12211 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 719,514 to 723,213 12211 mRNA_3844: 12212 - HMMPfam-Afadin- and alpha -actinin-Binding-PF11559, at 723,329 to 725,612 12212 mRNA_3845: 12213 - HMMPfam-Putative methyltransferase-PF10294,SUPERFAMILY--SSF53335, at 726,085 to 727,619 12213 mRNA_3846: 12214 - HMMPfam-HORMA domain-PF02301,HMMPfam-Zinc-finger double-stranded RNA-binding-PF12171,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-HORMA domain profile.-PS50815,SMART-zinc finger-SM00355,SUPERFAMILY--SSF56019,SUPERFAMILY--SSF57667, at 728,608 to 730,842 12214 mRNA_3847: 12215 - Hypothetical Protein, at 732,647 to 733,359 12215 mRNA_3848: 12216 - KOG1817 Ribonuclease, at 733,873 to 734,892 12216 mRNA_3849: 12217 - Hypothetical Protein, at 735,253 to 736,177 12217
Locus Name Description Strand Phenotype
mRNA_3839 12207 BLAST E3 ubiquitin-protein ligase RNF213 [Mus musculus] [Rh... + cofit
mRNA_3840 12208 K18849 BMT2 25S rRNA (adenine2142-N1)-methyltransferase - cofit
mRNA_3841 12209 K13431 SRPR signal recognition particle receptor subunit alpha + cofit
mRNA_3842 12210 K18179 COA6 cytochrome c oxidase assembly factor 6 - cofit
mRNA_3843 12211 HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232 + cofit
mRNA_3844 12212 HMMPfam-Afadin- and alpha -actinin-Binding-PF11559 - cofit
mRNA_3845 12213 HMMPfam-Putative methyltransferase-PF10294,SUPERFAMILY--SSF53335 - insig.
mRNA_3846 12214 HMMPfam-HORMA domain-PF02301,HMMPfam-Zinc-finger double-stranded RNA-binding-PF12171,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-HORMA domain profile.-PS50815,SMART-zinc finger-SM00355,SUPERFAMILY--SSF56019,SUPERFAMILY--SSF57667 - insig.
mRNA_3847 12215 Hypothetical Protein - no data
mRNA_3848 12216 KOG1817 Ribonuclease + cofit
mRNA_3849 12217 Hypothetical Protein + cofit

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