Gene info for mRNA_3846 in Rhodosporidium toruloides IFO0880

Name: 12214
Annotation: HMMPfam-HORMA domain-PF02301,HMMPfam-Zinc-finger double-stranded RNA-binding-PF12171,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-HORMA domain profile.-PS50815,SMART-zinc finger-SM00355,SUPERFAMILY--SSF56019,SUPERFAMILY--SSF57667
Type 1: Protein-coding gene
Located on scaffold scaffold_2, - strand, nucleotides 728,608 to 730,842
See nucleotide sequence around mRNA_3846 or for all of scaffold scaffold_2

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 12209 and 12210 are separated by 260 nucleotides12210 and 12211 are separated by 156 nucleotides12211 and 12212 are separated by 115 nucleotides12212 and 12213 are separated by 472 nucleotides12213 and 12214 are separated by 988 nucleotides12214 and 12215 are separated by 1804 nucleotides12215 and 12216 are separated by 513 nucleotides12216 and 12217 are separated by 360 nucleotides12217 and 12218 are separated by 2497 nucleotides12218 and 12219 are separated by 547 nucleotides mRNA_3841: 12209 - K13431 SRPR signal recognition particle receptor subunit alpha, at 716,088 to 718,591 12209 mRNA_3842: 12210 - K18179 COA6 cytochrome c oxidase assembly factor 6, at 718,852 to 719,357 12210 mRNA_3843: 12211 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 719,514 to 723,213 12211 mRNA_3844: 12212 - HMMPfam-Afadin- and alpha -actinin-Binding-PF11559, at 723,329 to 725,612 12212 mRNA_3845: 12213 - HMMPfam-Putative methyltransferase-PF10294,SUPERFAMILY--SSF53335, at 726,085 to 727,619 12213 mRNA_3846: 12214 - HMMPfam-HORMA domain-PF02301,HMMPfam-Zinc-finger double-stranded RNA-binding-PF12171,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-HORMA domain profile.-PS50815,SMART-zinc finger-SM00355,SUPERFAMILY--SSF56019,SUPERFAMILY--SSF57667, at 728,608 to 730,842 12214 mRNA_3847: 12215 - Hypothetical Protein, at 732,647 to 733,359 12215 mRNA_3848: 12216 - KOG1817 Ribonuclease, at 733,873 to 734,892 12216 mRNA_3849: 12217 - Hypothetical Protein, at 735,253 to 736,177 12217 mRNA_3850: 12218 - BLAST Protein kinase-like domain protein [Cordyceps confrag..., at 738,675 to 741,507 12218 mRNA_3851: 12219 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 742,055 to 744,016 12219
Locus Name Description Strand Phenotype
mRNA_3841 12209 K13431 SRPR signal recognition particle receptor subunit alpha + cofit
mRNA_3842 12210 K18179 COA6 cytochrome c oxidase assembly factor 6 - cofit
mRNA_3843 12211 HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232 + cofit
mRNA_3844 12212 HMMPfam-Afadin- and alpha -actinin-Binding-PF11559 - cofit
mRNA_3845 12213 HMMPfam-Putative methyltransferase-PF10294,SUPERFAMILY--SSF53335 - insig.
mRNA_3846 12214 HMMPfam-HORMA domain-PF02301,HMMPfam-Zinc-finger double-stranded RNA-binding-PF12171,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-HORMA domain profile.-PS50815,SMART-zinc finger-SM00355,SUPERFAMILY--SSF56019,SUPERFAMILY--SSF57667 - insig.
mRNA_3847 12215 Hypothetical Protein - no data
mRNA_3848 12216 KOG1817 Ribonuclease + cofit
mRNA_3849 12217 Hypothetical Protein + cofit
mRNA_3850 12218 BLAST Protein kinase-like domain protein [Cordyceps confrag... - cofit
mRNA_3851 12219 HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473 - insig.

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