Gene info for mRNA_3986 in Rhodosporidium toruloides IFO0880

Name: 12354
Annotation: K01439 dapE succinyl-diaminopimelate desuccinylase
Type 1: Protein-coding gene
Located on scaffold scaffold_2, + strand, nucleotides 1,078,866 to 1,080,824
See nucleotide sequence around mRNA_3986 or for all of scaffold scaffold_2

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 12349 and 12350 are separated by 165 nucleotides12350 and 12351 are separated by 466 nucleotides12351 and 12352 are separated by 1020 nucleotides12352 and 12353 are separated by 727 nucleotides12353 and 12354 are separated by 285 nucleotides12354 and 12355 are separated by 1156 nucleotides12355 and 12356 are separated by 1972 nucleotides12356 and 12357 are separated by 343 nucleotides12357 and 12358 are separated by 125 nucleotides12358 and 12359 are separated by 197 nucleotides mRNA_3981: 12349 - K10660 MARCH5 E3 ubiquitin-protein ligase MARCH5, at 1,058,258 to 1,059,791 12349 mRNA_3982: 12350 - K19525 VPS13A_C vacuolar protein sorting-associated protein 13A/C, at 1,059,957 to 1,071,266 12350 mRNA_3983: 12351 - HMMPfam-Mpv17 / PMP22 family-PF04117, at 1,071,733 to 1,072,892 12351 mRNA_3984: 12352 - Hypothetical Protein, at 1,073,913 to 1,075,521 12352 mRNA_3985: 12353 - K03448 FEN2, LIZ1 MFS transporter, ACS family, pantothenate transporter, at 1,076,249 to 1,078,580 12353 mRNA_3986: 12354 - K01439 dapE succinyl-diaminopimelate desuccinylase, at 1,078,866 to 1,080,824 12354 mRNA_3987: 12355 - K08576 CAPN7 calpain-7, at 1,081,981 to 1,082,833 12355 mRNA_3988: 12356 - Hypothetical Protein, at 1,084,806 to 1,085,290 12356 mRNA_3989: 12357 - BLAST Ribonucleases P/MRP protein subunit pop3 [Hypsizygus ..., at 1,085,634 to 1,087,441 12357 mRNA_3990: 12358 - K07561 DPH1, dph2 2-(3-amino-3-carboxypropyl)histidine synthase, at 1,087,567 to 1,089,527 12358 mRNA_3991: 12359 - KOG1012 Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain, at 1,089,725 to 1,094,754 12359
Locus Name Description Strand Phenotype
mRNA_3981 12349 K10660 MARCH5 E3 ubiquitin-protein ligase MARCH5 - cofit
mRNA_3982 12350 K19525 VPS13A_C vacuolar protein sorting-associated protein 13A/C - no data
mRNA_3983 12351 HMMPfam-Mpv17 / PMP22 family-PF04117 + cofit
mRNA_3984 12352 Hypothetical Protein - cofit
mRNA_3985 12353 K03448 FEN2, LIZ1 MFS transporter, ACS family, pantothenate transporter - no data
mRNA_3986 12354 K01439 dapE succinyl-diaminopimelate desuccinylase + cofit
mRNA_3987 12355 K08576 CAPN7 calpain-7 + cofit
mRNA_3988 12356 Hypothetical Protein + cofit
mRNA_3989 12357 BLAST Ribonucleases P/MRP protein subunit pop3 [Hypsizygus ... - no data
mRNA_3990 12358 K07561 DPH1, dph2 2-(3-amino-3-carboxypropyl)histidine synthase + cofit
mRNA_3991 12359 KOG1012 Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain - cofit

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