Gene info for mRNA_4092 in Rhodosporidium toruloides IFO0880

Name: 12460
Annotation: KOG0941 E3 ubiquitin protein ligase
Type 1: Protein-coding gene
Located on scaffold scaffold_2, + strand, nucleotides 1,337,124 to 1,338,710
See nucleotide sequence around mRNA_4092 or for all of scaffold scaffold_2

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 12455 and 12456 are separated by 124 nucleotides12456 and 12457 are separated by 393 nucleotides12457 and 12458 are separated by 175 nucleotides12458 and 12459 are separated by 299 nucleotides12459 and 12460 are separated by 166 nucleotides12460 and 12461 are separated by 235 nucleotides12461 and 12462 are separated by 975 nucleotides12462 and 12463 are separated by 1358 nucleotides12463 and 12464 are separated by 396 nucleotides12464 and 12465 are separated by 714 nucleotides mRNA_4087: 12455 - HMMPfam-Tannase and feruloyl esterase-PF07519,SUPERFAMILY--SSF53474, at 1,327,075 to 1,329,367 12455 mRNA_4088: 12456 - Hypothetical Protein, at 1,329,492 to 1,330,466 12456 mRNA_4089: 12457 - Hypothetical Protein, at 1,330,860 to 1,331,971 12457 mRNA_4090: 12458 - K18327 REXO4, REX4 RNA exonuclease 4, at 1,332,147 to 1,333,809 12458 mRNA_4091: 12459 - K03362 FBXW1_11, BTRC, beta-TRCP F-box and WD-40 domain protein 1/11, at 1,334,109 to 1,336,957 12459 mRNA_4092: 12460 - KOG0941 E3 ubiquitin protein ligase, at 1,337,124 to 1,338,710 12460 mRNA_4093: 12461 - Hypothetical Protein, at 1,338,946 to 1,342,318 12461 mRNA_4094: 12462 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1,343,294 to 1,345,409 12462 mRNA_4095: 12463 - BLAST Valine--tRNA ligase [Rhizoctonia solani], at 1,346,768 to 1,349,335 12463 mRNA_4096: 12464 - BLAST bestrophin domain protein [Rhizoctonia solani AG-3 Rh..., at 1,349,732 to 1,355,090 12464 mRNA_4097: 12465 - KOG1339 Aspartyl protease, at 1,355,805 to 1,357,462 12465
Locus Name Description Strand Phenotype
mRNA_4087 12455 HMMPfam-Tannase and feruloyl esterase-PF07519,SUPERFAMILY--SSF53474 - cofit
mRNA_4088 12456 Hypothetical Protein + cofit
mRNA_4089 12457 Hypothetical Protein - cofit
mRNA_4090 12458 K18327 REXO4, REX4 RNA exonuclease 4 - no data
mRNA_4091 12459 K03362 FBXW1_11, BTRC, beta-TRCP F-box and WD-40 domain protein 1/11 - cofit
mRNA_4092 12460 KOG0941 E3 ubiquitin protein ligase + cofit
mRNA_4093 12461 Hypothetical Protein - cofit
mRNA_4094 12462 KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) - insig.
mRNA_4095 12463 BLAST Valine--tRNA ligase [Rhizoctonia solani] + cofit
mRNA_4096 12464 BLAST bestrophin domain protein [Rhizoctonia solani AG-3 Rh... - cofit
mRNA_4097 12465 KOG1339 Aspartyl protease + cofit

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