Gene info for mRNA_4441 in Rhodosporidium toruloides IFO0880

Name: 12809
Annotation: SUPERFAMILY--SSF52047
Type 1: Protein-coding gene
Located on scaffold scaffold_3, + strand, nucleotides 187,082 to 188,392
See nucleotide sequence around mRNA_4441 or for all of scaffold scaffold_3

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 12804 and 12805 are separated by 236 nucleotides12805 and 12806 are separated by 523 nucleotides12806 and 12807 are separated by 193 nucleotides12807 and 12808 are separated by 283 nucleotides12808 and 12809 are separated by 488 nucleotides12809 and 12810 are separated by 183 nucleotides12810 and 12811 are separated by 625 nucleotides12811 and 12812 are separated by 597 nucleotides12812 and 12813 are separated by 126 nucleotides12813 and 12814 are separated by 256 nucleotides mRNA_4436: 12804 - Hypothetical Protein, at 178,306 to 178,939 12804 mRNA_4437: 12805 - KOG4629 Predicted mechanosensitive ion channel, at 179,176 to 181,994 12805 mRNA_4438: 12806 - Hypothetical Protein, at 182,518 to 183,149 12806 mRNA_4439: 12807 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 183,343 to 183,707 12807 mRNA_4440: 12808 - KOG2439 Nuclear architecture related protein, at 183,991 to 186,593 12808 mRNA_4441: 12809 - SUPERFAMILY--SSF52047, at 187,082 to 188,392 12809 mRNA_4442: 12810 - SUPERFAMILY--SSF52047, at 188,576 to 190,157 12810 mRNA_4443: 12811 - SUPERFAMILY--SSF52047, at 190,783 to 192,210 12811 mRNA_4444: 12812 - K14327 UPF2, RENT2 regulator of nonsense transcripts 2, at 192,808 to 197,198 12812 mRNA_4445: 12813 - K16342 PLA2G4, CPLA2 cytosolic phospholipase A2, at 197,325 to 199,939 12813 mRNA_4446: 12814 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 200,196 to 203,838 12814
Locus Name Description Strand Phenotype
mRNA_4436 12804 Hypothetical Protein + insig.
mRNA_4437 12805 KOG4629 Predicted mechanosensitive ion channel + cofit
mRNA_4438 12806 Hypothetical Protein + cofit
mRNA_4439 12807 BLAST expressed protein [Cryptococcus neoformans var. neofo... - cofit
mRNA_4440 12808 KOG2439 Nuclear architecture related protein + no data
mRNA_4441 12809 SUPERFAMILY--SSF52047 + cofit
mRNA_4442 12810 SUPERFAMILY--SSF52047 + cofit
mRNA_4443 12811 SUPERFAMILY--SSF52047 + cofit
mRNA_4444 12812 K14327 UPF2, RENT2 regulator of nonsense transcripts 2 - no data
mRNA_4445 12813 K16342 PLA2G4, CPLA2 cytosolic phospholipase A2 + cofit
mRNA_4446 12814 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701 - cofit

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