Gene info for mRNA_4444 in Rhodosporidium toruloides IFO0880

Name: 12812
Annotation: K14327 UPF2, RENT2 regulator of nonsense transcripts 2
Type 1: Protein-coding gene
Located on scaffold scaffold_3, - strand, nucleotides 192,808 to 197,198
See nucleotide sequence around mRNA_4444 or for all of scaffold scaffold_3

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 12807 and 12808 are separated by 283 nucleotides12808 and 12809 are separated by 488 nucleotides12809 and 12810 are separated by 183 nucleotides12810 and 12811 are separated by 625 nucleotides12811 and 12812 are separated by 597 nucleotides12812 and 12813 are separated by 126 nucleotides12813 and 12814 are separated by 256 nucleotides12814 and 12815 are separated by 220 nucleotides12815 and 12816 are separated by 89 nucleotides12816 and 12817 are separated by 90 nucleotides mRNA_4439: 12807 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 183,343 to 183,707 12807 mRNA_4440: 12808 - KOG2439 Nuclear architecture related protein, at 183,991 to 186,593 12808 mRNA_4441: 12809 - SUPERFAMILY--SSF52047, at 187,082 to 188,392 12809 mRNA_4442: 12810 - SUPERFAMILY--SSF52047, at 188,576 to 190,157 12810 mRNA_4443: 12811 - SUPERFAMILY--SSF52047, at 190,783 to 192,210 12811 mRNA_4444: 12812 - K14327 UPF2, RENT2 regulator of nonsense transcripts 2, at 192,808 to 197,198 12812 mRNA_4445: 12813 - K16342 PLA2G4, CPLA2 cytosolic phospholipase A2, at 197,325 to 199,939 12813 mRNA_4446: 12814 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 200,196 to 203,838 12814 mRNA_4447: 12815 - K12666 OST1, RPN1 oligosaccharyltransferase complex subunit alpha (ribophorin I), at 204,059 to 206,130 12815 mRNA_4448: 12816 - KOG3979 FGF receptor activating protein 1, at 206,220 to 210,253 12816 mRNA_4449: 12817 - K14168 CTU1, NCS6 cytoplasmic tRNA 2-thiolation protein 1, at 210,344 to 212,336 12817
Locus Name Description Strand Phenotype
mRNA_4439 12807 BLAST expressed protein [Cryptococcus neoformans var. neofo... - cofit
mRNA_4440 12808 KOG2439 Nuclear architecture related protein + no data
mRNA_4441 12809 SUPERFAMILY--SSF52047 + cofit
mRNA_4442 12810 SUPERFAMILY--SSF52047 + cofit
mRNA_4443 12811 SUPERFAMILY--SSF52047 + cofit
mRNA_4444 12812 K14327 UPF2, RENT2 regulator of nonsense transcripts 2 - no data
mRNA_4445 12813 K16342 PLA2G4, CPLA2 cytosolic phospholipase A2 + cofit
mRNA_4446 12814 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701 - cofit
mRNA_4447 12815 K12666 OST1, RPN1 oligosaccharyltransferase complex subunit alpha (ribophorin I) + no data
mRNA_4448 12816 KOG3979 FGF receptor activating protein 1 - cofit
mRNA_4449 12817 K14168 CTU1, NCS6 cytoplasmic tRNA 2-thiolation protein 1 + strong

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