Gene info for mRNA_4574 in Rhodosporidium toruloides IFO0880

Name: 12942
Annotation: K12184 VPS28 ESCRT-I complex subunit VPS28
Type 1: Protein-coding gene
Located on scaffold scaffold_3, - strand, nucleotides 499,044 to 500,144
See nucleotide sequence around mRNA_4574 or for all of scaffold scaffold_3

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 12937 and 12938 are separated by 217 nucleotides12938 and 12939 are separated by 1038 nucleotides12939 and 12940 are separated by 111 nucleotides12940 and 12941 are separated by 123 nucleotides12941 and 12942 are separated by 54 nucleotides12942 and 12943 are separated by 271 nucleotides12943 and 12944 are separated by 287 nucleotides12944 and 12945 are separated by 751 nucleotides12945 and 12946 are separated by 680 nucleotides12946 and 12947 are separated by 1508 nucleotides mRNA_4569: 12937 - HMMPfam-Integral peroxisomal membrane peroxin-PF06398, at 489,481 to 490,955 12937 mRNA_4570: 12938 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 491,173 to 492,372 12938 mRNA_4571: 12939 - KOG4419 5' nucleotidase, at 493,411 to 495,654 12939 mRNA_4572: 12940 - K06963 TAN1, THUMPD1 tRNA acetyltransferase TAN1, at 495,766 to 497,109 12940 mRNA_4573: 12941 - K03142 TFIIH2, GTF2H2, SSL1 transcription initiation factor TFIIH subunit 2, at 497,233 to 498,989 12941 mRNA_4574: 12942 - K12184 VPS28 ESCRT-I complex subunit VPS28, at 499,044 to 500,144 12942 mRNA_4575: 12943 - HMMPfam-ICE2-PF08426, at 500,416 to 502,164 12943 mRNA_4576: 12944 - K00787 FDPS farnesyl diphosphate synthase, at 502,452 to 503,977 12944 mRNA_4577: 12945 - HMMPfam-CFEM domain-PF05730,SMART--SM00747, at 504,729 to 505,838 12945 mRNA_4578: 12946 - Hypothetical Protein, at 506,519 to 507,162 12946 mRNA_4579: 12947 - KOG1399 Flavin-containing monooxygenase, at 508,671 to 511,163 12947
Locus Name Description Strand Phenotype
mRNA_4569 12937 HMMPfam-Integral peroxisomal membrane peroxin-PF06398 - insig.
mRNA_4570 12938 HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959 - cofit
mRNA_4571 12939 KOG4419 5' nucleotidase + cofit
mRNA_4572 12940 K06963 TAN1, THUMPD1 tRNA acetyltransferase TAN1 - no data
mRNA_4573 12941 K03142 TFIIH2, GTF2H2, SSL1 transcription initiation factor TFIIH subunit 2 + no data
mRNA_4574 12942 K12184 VPS28 ESCRT-I complex subunit VPS28 - no data
mRNA_4575 12943 HMMPfam-ICE2-PF08426 + cofit
mRNA_4576 12944 K00787 FDPS farnesyl diphosphate synthase + no data
mRNA_4577 12945 HMMPfam-CFEM domain-PF05730,SMART--SM00747 + cofit
mRNA_4578 12946 Hypothetical Protein + no data
mRNA_4579 12947 KOG1399 Flavin-containing monooxygenase - cofit

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