Gene info for mRNA_4600 in Rhodosporidium toruloides IFO0880

Name: 12968
Annotation: K08343 ATG3 ubiquitin-like-conjugating enzyme ATG3
Type 1: Protein-coding gene
Located on scaffold scaffold_3, - strand, nucleotides 558,585 to 560,759
See nucleotide sequence around mRNA_4600 or for all of scaffold scaffold_3

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 12963 and 12964 are separated by 244 nucleotides12964 and 12965 are separated by 101 nucleotides12965 and 12966 are separated by 581 nucleotides12966 and 12967 are separated by 77 nucleotides12967 and 12968 are separated by 97 nucleotides12968 and 12969 are separated by 115 nucleotides12969 and 12970 are separated by 285 nucleotides12970 and 12971 are separated by 406 nucleotides12971 and 12972 are separated by 600 nucleotides12972 and 12973 are separated by 238 nucleotides mRNA_4595: 12963 - KOG2186 Cell growth-regulating nucleolar protein, at 549,848 to 550,552 12963 mRNA_4596: 12964 - KOG4009 NADH-ubiquinone oxidoreductase, subunit NDUFB10/PDSW, at 550,797 to 551,736 12964 mRNA_4597: 12965 - K01836 PGM3 phosphoacetylglucosamine mutase, at 551,838 to 553,839 12965 mRNA_4598: 12966 - K00418 QCR8, UQCRQ ubiquinol-cytochrome c reductase subunit 8, at 554,421 to 554,905 12966 mRNA_4599: 12967 - K12820 DHX15, PRP43 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43, at 554,983 to 558,487 12967 mRNA_4600: 12968 - K08343 ATG3 ubiquitin-like-conjugating enzyme ATG3, at 558,585 to 560,759 12968 mRNA_4601: 12969 - HMMPfam-Sen15 protein-PF09631,SUPERFAMILY--SSF53032, at 560,875 to 561,580 12969 mRNA_4602: 12970 - HMMPfam-NYN domain-PF01936, at 561,866 to 562,949 12970 mRNA_4603: 12971 - K07119 K07119 uncharacterized protein, at 563,356 to 565,108 12971 mRNA_4604: 12972 - K10747 LIG1 DNA ligase 1, at 565,709 to 567,987 12972 mRNA_4605: 12973 - KOG0254 Predicted transporter (major facilitator superfamily), at 568,226 to 569,633 12973
Locus Name Description Strand Phenotype
mRNA_4595 12963 KOG2186 Cell growth-regulating nucleolar protein + cofit
mRNA_4596 12964 KOG4009 NADH-ubiquinone oxidoreductase, subunit NDUFB10/PDSW - no data
mRNA_4597 12965 K01836 PGM3 phosphoacetylglucosamine mutase + no data
mRNA_4598 12966 K00418 QCR8, UQCRQ ubiquinol-cytochrome c reductase subunit 8 + no data
mRNA_4599 12967 K12820 DHX15, PRP43 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 - no data
mRNA_4600 12968 K08343 ATG3 ubiquitin-like-conjugating enzyme ATG3 - strong
mRNA_4601 12969 HMMPfam-Sen15 protein-PF09631,SUPERFAMILY--SSF53032 + no data
mRNA_4602 12970 HMMPfam-NYN domain-PF01936 - cofit
mRNA_4603 12971 K07119 K07119 uncharacterized protein - cofit
mRNA_4604 12972 K10747 LIG1 DNA ligase 1 - no data
mRNA_4605 12973 KOG0254 Predicted transporter (major facilitator superfamily) - cofit

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