Gene info for mRNA_4610 in Rhodosporidium toruloides IFO0880

Name: 12978
Annotation: HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701
Type 1: Protein-coding gene
Located on scaffold scaffold_3, + strand, nucleotides 578,505 to 580,784
See nucleotide sequence around mRNA_4610 or for all of scaffold scaffold_3

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 12973 and 12974 are separated by 261 nucleotides12974 and 12975 are separated by 84 nucleotides12975 and 12976 are separated by 591 nucleotides12976 and 12977 are separated by 350 nucleotides12977 and 12978 are separated by 1223 nucleotides12978 and 12979 are separated by 325 nucleotides12979 and 12980 are separated by 6200 nucleotides12980 and 12981 are separated by 3557 nucleotides12981 and 12982 are separated by 1049 nucleotides12982 and 12983 are separated by 2681 nucleotides mRNA_4605: 12973 - KOG0254 Predicted transporter (major facilitator superfamily), at 568,226 to 569,633 12973 mRNA_4606: 12974 - HMMPfam-Zinc-binding dehydrogenase-PF00107,HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,ProSitePatterns-Zinc-containing alcohol dehydrogenases signature.-PS00059,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 569,895 to 571,183 12974 mRNA_4607: 12975 - BLAST TrfA domain protein, putative [Rhizoctonia solani AG-..., at 571,268 to 571,973 12975 mRNA_4608: 12976 - KOG0254 Predicted transporter (major facilitator superfamily), at 572,565 to 575,380 12976 mRNA_4609: 12977 - K00008 SORD, gutB L-iditol 2-dehydrogenase, at 575,731 to 577,281 12977 mRNA_4610: 12978 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 578,505 to 580,784 12978 mRNA_4611: 12979 - K07652 vicK two-component system, OmpR family, sensor histidine kinase VicK, at 581,110 to 587,880 12979 mRNA_4612: 12980 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 594,081 to 594,633 12980 mRNA_4613: 12981 - BLAST phospholipid-translocating ATPase [Microbotryum lychn..., at 598,191 to 598,847 12981 mRNA_4614: 12982 - BLAST B-cell lymphoma/leukemia 11B [Orchesella cincta], at 599,897 to 601,386 12982 mRNA_4615: 12983 - Hypothetical Protein, at 604,068 to 604,303 12983
Locus Name Description Strand Phenotype
mRNA_4605 12973 KOG0254 Predicted transporter (major facilitator superfamily) - cofit
mRNA_4606 12974 HMMPfam-Zinc-binding dehydrogenase-PF00107,HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,ProSitePatterns-Zinc-containing alcohol dehydrogenases signature.-PS00059,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735 - cofit
mRNA_4607 12975 BLAST TrfA domain protein, putative [Rhizoctonia solani AG-... - cofit
mRNA_4608 12976 KOG0254 Predicted transporter (major facilitator superfamily) - cofit
mRNA_4609 12977 K00008 SORD, gutB L-iditol 2-dehydrogenase + insig.
mRNA_4610 12978 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701 + cofit
mRNA_4611 12979 K07652 vicK two-component system, OmpR family, sensor histidine kinase VicK - cofit
mRNA_4612 12980 KOG0001 Ubiquitin and ubiquitin-like proteins - no data
mRNA_4613 12981 BLAST phospholipid-translocating ATPase [Microbotryum lychn... + cofit
mRNA_4614 12982 BLAST B-cell lymphoma/leukemia 11B [Orchesella cincta] + insig.
mRNA_4615 12983 Hypothetical Protein - no data

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