Gene info for mRNA_4716 in Rhodosporidium toruloides IFO0880

Name: 13084
Annotation: SUPERFAMILY--SSF55753
Type 1: Protein-coding gene
Located on scaffold scaffold_3, + strand, nucleotides 841,773 to 842,668
See nucleotide sequence around mRNA_4716 or for all of scaffold scaffold_3

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 13079 and 13080 are separated by 232 nucleotides13080 and 13081 are separated by 334 nucleotides13081 and 13082 are separated by 124 nucleotides13082 and 13083 are separated by 115 nucleotides13083 and 13084 are separated by 222 nucleotides13084 and 13085 are separated by 1417 nucleotides13085 and 13086 are separated by 841 nucleotides13086 and 13087 are separated by 283 nucleotides13087 and 13088 are separated by 283 nucleotides13088 and 13089 are separated by 242 nucleotides mRNA_4711: 13079 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 826,547 to 830,720 13079 mRNA_4712: 13080 - HMMPfam-N-terminal C2 in EEIG1 and EHBP1 proteins-PF10358, at 830,953 to 834,055 13080 mRNA_4713: 13081 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 834,390 to 838,234 13081 mRNA_4714: 13082 - K01183 E3.2.1.14 chitinase, at 838,359 to 840,435 13082 mRNA_4715: 13083 - KOG1730 Thioredoxin-like protein, at 840,551 to 841,550 13083 mRNA_4716: 13084 - SUPERFAMILY--SSF55753, at 841,773 to 842,668 13084 mRNA_4717: 13085 - BLAST putative proteasome regulatory subunit 12 [Rhizoctoni..., at 844,086 to 846,101 13085 mRNA_4718: 13086 - HMMPfam-Thaumatin family-PF00314,PRINTS-Pathogenesis-related protein signature-PR00347,ProSitePatterns-Thaumatin family signature.-PS00316,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 846,943 to 849,026 13086 mRNA_4719: 13087 - K18693 DPP1 diacylglycerol diphosphate phosphatase / phosphatidate phosphatase, at 849,310 to 850,936 13087 mRNA_4720: 13088 - K01415 ECE endothelin-converting enzyme, at 851,220 to 854,422 13088 mRNA_4721: 13089 - K10643 CNOT4, NOT4, MOT2 CCR4-NOT transcription complex subunit 4, at 854,665 to 858,103 13089
Locus Name Description Strand Phenotype
mRNA_4711 13079 KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily + cofit
mRNA_4712 13080 HMMPfam-N-terminal C2 in EEIG1 and EHBP1 proteins-PF10358 - cofit
mRNA_4713 13081 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 + cofit
mRNA_4714 13082 K01183 E3.2.1.14 chitinase - cofit
mRNA_4715 13083 KOG1730 Thioredoxin-like protein + cofit
mRNA_4716 13084 SUPERFAMILY--SSF55753 + cofit
mRNA_4717 13085 BLAST putative proteasome regulatory subunit 12 [Rhizoctoni... - insig.
mRNA_4718 13086 HMMPfam-Thaumatin family-PF00314,PRINTS-Pathogenesis-related protein signature-PR00347,ProSitePatterns-Thaumatin family signature.-PS00316,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870 - cofit
mRNA_4719 13087 K18693 DPP1 diacylglycerol diphosphate phosphatase / phosphatidate phosphatase + cofit
mRNA_4720 13088 K01415 ECE endothelin-converting enzyme + cofit
mRNA_4721 13089 K10643 CNOT4, NOT4, MOT2 CCR4-NOT transcription complex subunit 4 + cofit

Or browse nearby genes

Or see the comparative fitness browser