Gene info for mRNA_4731 in Rhodosporidium toruloides IFO0880

Name: 13099
Annotation: K08770 UBC ubiquitin C
Type 1: Protein-coding gene
Located on scaffold scaffold_3, + strand, nucleotides 876,740 to 878,353
See nucleotide sequence around mRNA_4731 or for all of scaffold scaffold_3

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 13094 and 13095 are separated by 279 nucleotides13095 and 13096 are separated by 70 nucleotides13096 and 13097 are separated by 200 nucleotides13097 and 13098 are separated by 324 nucleotides13098 and 13099 are separated by 199 nucleotides13099 and 13100 are separated by 1078 nucleotides13100 and 13101 are separated by 557 nucleotides13101 and 13102 are separated by 900 nucleotides13102 and 13103 are separated by 484 nucleotides13103 and 13104 are separated by 103 nucleotides mRNA_4726: 13094 - KOG3214 Uncharacterized Zn ribbon-containing protein, at 866,956 to 867,873 13094 mRNA_4727: 13095 - Hypothetical Protein, at 868,153 to 868,831 13095 mRNA_4728: 13096 - HMMPfam-CUE domain-PF02845,HMMPfam-2OG-Fe(II) oxygenase superfamily-PF13532,ProSiteProfiles-CUE domain profile.-PS51140,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197, at 868,902 to 870,638 13096 mRNA_4729: 13097 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 870,839 to 873,938 13097 mRNA_4730: 13098 - K06062 PCAF, KAT2, GCN5 histone acetyltransferase, at 874,263 to 876,540 13098 mRNA_4731: 13099 - K08770 UBC ubiquitin C, at 876,740 to 878,353 13099 mRNA_4732: 13100 - HMMPfam-Major intrinsic protein-PF00230,PRINTS-Major intrinsic protein family signature-PR00783,SUPERFAMILY--SSF81338, at 879,432 to 880,805 13100 mRNA_4733: 13101 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 881,363 to 882,284 13101 mRNA_4734: 13102 - Hypothetical Protein, at 883,185 to 884,845 13102 mRNA_4735: 13103 - K03654 recQ ATP-dependent DNA helicase RecQ, at 885,330 to 888,560 13103 mRNA_4736: 13104 - K02503 HINT1, hinT, hit histidine triad (HIT) family protein, at 888,664 to 889,665 13104
Locus Name Description Strand Phenotype
mRNA_4726 13094 KOG3214 Uncharacterized Zn ribbon-containing protein + cofit
mRNA_4727 13095 Hypothetical Protein - cofit
mRNA_4728 13096 HMMPfam-CUE domain-PF02845,HMMPfam-2OG-Fe(II) oxygenase superfamily-PF13532,ProSiteProfiles-CUE domain profile.-PS51140,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197 + cofit
mRNA_4729 13097 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 + cofit
mRNA_4730 13098 K06062 PCAF, KAT2, GCN5 histone acetyltransferase + cofit
mRNA_4731 13099 K08770 UBC ubiquitin C + cofit
mRNA_4732 13100 HMMPfam-Major intrinsic protein-PF00230,PRINTS-Major intrinsic protein family signature-PR00783,SUPERFAMILY--SSF81338 + cofit
mRNA_4733 13101 HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735 + cofit
mRNA_4734 13102 Hypothetical Protein + cofit
mRNA_4735 13103 K03654 recQ ATP-dependent DNA helicase RecQ + cofit
mRNA_4736 13104 K02503 HINT1, hinT, hit histidine triad (HIT) family protein - cofit

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