Gene info for mRNA_4888 in Rhodosporidium toruloides IFO0880

Name: 13256
Annotation: K20044 PICALM phosphatidylinositol-binding clathrin assembly protein
Type 1: Protein-coding gene
Located on scaffold scaffold_3, + strand, nucleotides 1,224,614 to 1,227,335
See nucleotide sequence around mRNA_4888 or for all of scaffold scaffold_3

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 13251 and 13252 are separated by 481 nucleotides13252 and 13253 are separated by 280 nucleotides13253 and 13254 are separated by 249 nucleotides13254 and 13255 are separated by 155 nucleotides13255 and 13256 are separated by 694 nucleotides13256 and 13257 are separated by 87 nucleotides13257 and 13258 are separated by 347 nucleotides13258 and 13259 are separated by 1217 nucleotides13259 and 13260 are separated by 268 nucleotides13260 and 13261 are separated by 82 nucleotides mRNA_4883: 13251 - HMMPfam-Uncharacterised protein family (UPF0203)-PF05254, at 1,217,167 to 1,217,657 13251 mRNA_4884: 13252 - K07555 ATPeAF1, ATPAF1, ATP11 ATP synthase mitochondrial F1 complex assembly factor 1, at 1,218,139 to 1,219,355 13252 mRNA_4885: 13253 - K03105 SRP19 signal recognition particle subunit SRP19, at 1,219,636 to 1,220,593 13253 mRNA_4886: 13254 - Hypothetical Protein, at 1,220,843 to 1,222,544 13254 mRNA_4887: 13255 - K11365 SGF73 SAGA-associated factor 73, at 1,222,700 to 1,223,919 13255 mRNA_4888: 13256 - K20044 PICALM phosphatidylinositol-binding clathrin assembly protein, at 1,224,614 to 1,227,335 13256 mRNA_4889: 13257 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,227,423 to 1,230,111 13257 mRNA_4890: 13258 - HMMPfam-SH3 domain-PF00018,HMMPfam-Cortical protein marker for cell polarity-PF12768,ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044,SUPERFAMILY--SSF50965,SUPERFAMILY--SSF69322, at 1,230,459 to 1,234,781 13258 mRNA_4891: 13259 - KOG3140 Predicted membrane protein, at 1,235,999 to 1,237,638 13259 mRNA_4892: 13260 - K00915 IPMK, IPK2 inositol-polyphosphate multikinase, at 1,237,907 to 1,239,157 13260 mRNA_4893: 13261 - Hypothetical Protein, at 1,239,240 to 1,240,302 13261
Locus Name Description Strand Phenotype
mRNA_4883 13251 HMMPfam-Uncharacterised protein family (UPF0203)-PF05254 + no data
mRNA_4884 13252 K07555 ATPeAF1, ATPAF1, ATP11 ATP synthase mitochondrial F1 complex assembly factor 1 + no data
mRNA_4885 13253 K03105 SRP19 signal recognition particle subunit SRP19 + insig.
mRNA_4886 13254 Hypothetical Protein + insig.
mRNA_4887 13255 K11365 SGF73 SAGA-associated factor 73 - cofit
mRNA_4888 13256 K20044 PICALM phosphatidylinositol-binding clathrin assembly protein + insig.
mRNA_4889 13257 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 - cofit
mRNA_4890 13258 HMMPfam-SH3 domain-PF00018,HMMPfam-Cortical protein marker for cell polarity-PF12768,ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044,SUPERFAMILY--SSF50965,SUPERFAMILY--SSF69322 - no data
mRNA_4891 13259 KOG3140 Predicted membrane protein + cofit
mRNA_4892 13260 K00915 IPMK, IPK2 inositol-polyphosphate multikinase - no data
mRNA_4893 13261 Hypothetical Protein + no data

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