Gene info for mRNA_4928 in Rhodosporidium toruloides IFO0880

Name: 13296
Annotation: HMMPfam-Transient receptor potential (TRP) ion channel-PF06011,HMMPfam-ML-like domain-PF14558
Type 1: Protein-coding gene
Located on scaffold scaffold_3, - strand, nucleotides 1,337,111 to 1,340,226
See nucleotide sequence around mRNA_4928 or for all of scaffold scaffold_3

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 13291 and 13292 are separated by 124 nucleotides13292 and 13293 are separated by 286 nucleotides13293 and 13294 are separated by 87 nucleotides13294 and 13295 are separated by 201 nucleotides13295 and 13296 are separated by 182 nucleotides13296 and 13297 are separated by 564 nucleotides13297 and 13298 are separated by 326 nucleotides13298 and 13299 are separated by 333 nucleotides13299 and 13300 are separated by 499 nucleotides13300 and 13301 are separated by 338 nucleotides mRNA_4923: 13291 - K03141 TFIIH1, GTF2H1, TFB1 transcription initiation factor TFIIH subunit 1, at 1,320,698 to 1,323,090 13291 mRNA_4924: 13292 - KOG3012 Uncharacterized conserved protein, at 1,323,215 to 1,324,561 13292 mRNA_4925: 13293 - ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045, at 1,324,848 to 1,328,229 13293 mRNA_4926: 13294 - ProSiteProfiles-Chromo and chromo shadow domain profile.-PS50013, at 1,328,317 to 1,334,558 13294 mRNA_4927: 13295 - HMMPfam-Beta-lactamase-PF00144,SUPERFAMILY--SSF56601, at 1,334,760 to 1,336,928 13295 mRNA_4928: 13296 - HMMPfam-Transient receptor potential (TRP) ion channel-PF06011,HMMPfam-ML-like domain-PF14558, at 1,337,111 to 1,340,226 13296 mRNA_4929: 13297 - K01956 carA, CPA1 carbamoyl-phosphate synthase small subunit, at 1,340,791 to 1,342,395 13297 mRNA_4930: 13298 - HMMPfam-Ubiquitin family-PF00240,HMMPfam-BAG domain-PF02179,ProSiteProfiles-Ubiquitin domain profile.-PS50053,ProSiteProfiles-BAG domain profile.-PS51035,SMART-BAG domains, present in regulator of Hsp70 proteins-SM00264,SUPERFAMILY--SSF54236,SUPERFAMILY--SSF63491, at 1,342,722 to 1,344,500 13298 mRNA_4931: 13299 - ProSiteProfiles-BTB domain profile.-PS50097, at 1,344,834 to 1,346,285 13299 mRNA_4932: 13300 - K11547 NDC80, HEC1, TID3 kinetochore protein NDC80, at 1,346,785 to 1,349,520 13300 mRNA_4933: 13301 - K14972 PAXIP1, PTIP PAX-interacting protein 1, at 1,349,859 to 1,354,237 13301
Locus Name Description Strand Phenotype
mRNA_4923 13291 K03141 TFIIH1, GTF2H1, TFB1 transcription initiation factor TFIIH subunit 1 + no data
mRNA_4924 13292 KOG3012 Uncharacterized conserved protein - cofit
mRNA_4925 13293 ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045 + cofit
mRNA_4926 13294 ProSiteProfiles-Chromo and chromo shadow domain profile.-PS50013 - cofit
mRNA_4927 13295 HMMPfam-Beta-lactamase-PF00144,SUPERFAMILY--SSF56601 + cofit
mRNA_4928 13296 HMMPfam-Transient receptor potential (TRP) ion channel-PF06011,HMMPfam-ML-like domain-PF14558 - cofit
mRNA_4929 13297 K01956 carA, CPA1 carbamoyl-phosphate synthase small subunit - strong
mRNA_4930 13298 HMMPfam-Ubiquitin family-PF00240,HMMPfam-BAG domain-PF02179,ProSiteProfiles-Ubiquitin domain profile.-PS50053,ProSiteProfiles-BAG domain profile.-PS51035,SMART-BAG domains, present in regulator of Hsp70 proteins-SM00264,SUPERFAMILY--SSF54236,SUPERFAMILY--SSF63491 + cofit
mRNA_4931 13299 ProSiteProfiles-BTB domain profile.-PS50097 - cofit
mRNA_4932 13300 K11547 NDC80, HEC1, TID3 kinetochore protein NDC80 - no data
mRNA_4933 13301 K14972 PAXIP1, PTIP PAX-interacting protein 1 + cofit

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