Gene info for mRNA_4941 in Rhodosporidium toruloides IFO0880

Name: 13309
Annotation: K12608 CAF16 CCR4-NOT complex subunit CAF16
Type 1: Protein-coding gene
Located on scaffold scaffold_3, + strand, nucleotides 1,368,414 to 1,369,977
See nucleotide sequence around mRNA_4941 or for all of scaffold scaffold_3

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 13304 and 13305 are separated by 364 nucleotides13305 and 13306 are separated by 695 nucleotides13306 and 13307 are separated by 151 nucleotides13307 and 13308 are separated by 701 nucleotides13308 and 13309 are separated by 426 nucleotides13309 and 13310 are separated by 230 nucleotides13310 and 13311 are separated by 658 nucleotides13311 and 13312 are separated by 320 nucleotides13312 and 13313 are separated by 231 nucleotides13313 and 13314 are separated by 118 nucleotides mRNA_4936: 13304 - HMMPfam-MFS_1 like family-PF12832, at 1,359,714 to 1,362,398 13304 mRNA_4937: 13305 - HMMPfam-Single-strand binding protein family-PF00436,ProSiteProfiles-Single-strand binding (SSB) domain profile.-PS50935,SUPERFAMILY--SSF50249, at 1,362,763 to 1,363,546 13305 mRNA_4938: 13306 - HMMPfam-Protein of unknown function (DUF1749)-PF08538,SUPERFAMILY--SSF53474, at 1,364,242 to 1,365,196 13306 mRNA_4939: 13307 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 1,365,348 to 1,366,647 13307 mRNA_4940: 13308 - K06693 PSMD9 26S proteasome non-ATPase regulatory subunit 9, at 1,367,349 to 1,367,987 13308 mRNA_4941: 13309 - K12608 CAF16 CCR4-NOT complex subunit CAF16, at 1,368,414 to 1,369,977 13309 mRNA_4942: 13310 - Hypothetical Protein, at 1,370,208 to 1,371,359 13310 mRNA_4943: 13311 - K13095 SF1 splicing factor 1, at 1,372,018 to 1,374,079 13311 mRNA_4944: 13312 - KOG1375 Beta tubulin, at 1,374,400 to 1,376,265 13312 mRNA_4945: 13313 - Hypothetical Protein, at 1,376,497 to 1,378,672 13313 mRNA_4946: 13314 - KOG0143 Iron/ascorbate family oxidoreductases, at 1,378,791 to 1,380,023 13314
Locus Name Description Strand Phenotype
mRNA_4936 13304 HMMPfam-MFS_1 like family-PF12832 - insig.
mRNA_4937 13305 HMMPfam-Single-strand binding protein family-PF00436,ProSiteProfiles-Single-strand binding (SSB) domain profile.-PS50935,SUPERFAMILY--SSF50249 - no data
mRNA_4938 13306 HMMPfam-Protein of unknown function (DUF1749)-PF08538,SUPERFAMILY--SSF53474 - cofit
mRNA_4939 13307 HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928 - cofit
mRNA_4940 13308 K06693 PSMD9 26S proteasome non-ATPase regulatory subunit 9 - cofit
mRNA_4941 13309 K12608 CAF16 CCR4-NOT complex subunit CAF16 + cofit
mRNA_4942 13310 Hypothetical Protein - cofit
mRNA_4943 13311 K13095 SF1 splicing factor 1 - no data
mRNA_4944 13312 KOG1375 Beta tubulin - cofit
mRNA_4945 13313 Hypothetical Protein + insig.
mRNA_4946 13314 KOG0143 Iron/ascorbate family oxidoreductases - cofit

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