Gene info for mRNA_5024 in Rhodosporidium toruloides IFO0880

Name: 13392
Annotation: K11124 SMG6, EST1A protein SMG6
Type 1: Protein-coding gene
Located on scaffold scaffold_3, + strand, nucleotides 1,575,656 to 1,580,280
See nucleotide sequence around mRNA_5024 or for all of scaffold scaffold_3

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 13387 and 13388 are separated by 326 nucleotides13388 and 13389 are separated by 190 nucleotides13389 and 13390 are separated by 241 nucleotides13390 and 13391 are separated by 240 nucleotides13391 and 13392 are separated by 491 nucleotides13392 and 13393 are separated by 433 nucleotides13393 and 13394 are separated by 186 nucleotides13394 and 13395 are separated by 544 nucleotides13395 and 13396 are separated by 1103 nucleotides13396 and 13397 are separated by 683 nucleotides mRNA_5019: 13387 - HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 1,560,613 to 1,563,320 13387 mRNA_5020: 13388 - K20178 VPS8 vacuolar protein sorting-associated protein 8, at 1,563,647 to 1,569,301 13388 mRNA_5021: 13389 - K14347 SLC10A7, P7 solute carrier family 10 (sodium/bile acid cotransporter), member 7, at 1,569,492 to 1,571,260 13389 mRNA_5022: 13390 - Hypothetical Protein, at 1,571,502 to 1,572,574 13390 mRNA_5023: 13391 - K17866 DPH2 diphthamide biosynthesis protein 2, at 1,572,815 to 1,575,164 13391 mRNA_5024: 13392 - K11124 SMG6, EST1A protein SMG6, at 1,575,656 to 1,580,280 13392 mRNA_5025: 13393 - BLAST HECT-type ubiquitin ligase-interacting protein creD [..., at 1,580,714 to 1,583,108 13393 mRNA_5026: 13394 - K01698 hemB, ALAD porphobilinogen synthase, at 1,583,295 to 1,584,679 13394 mRNA_5027: 13395 - HMMPfam-Cryptococcal mannosyltransferase 1-PF11735, at 1,585,224 to 1,587,309 13395 mRNA_5028: 13396 - HMMPfam-Cryptococcal mannosyltransferase 1-PF11735, at 1,588,413 to 1,590,373 13396 mRNA_5029: 13397 - HMMPfam-Ornithine decarboxylase antizyme-PF02100,SUPERFAMILY--SSF55729, at 1,591,057 to 1,592,630 13397
Locus Name Description Strand Phenotype
mRNA_5019 13387 HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959 + cofit
mRNA_5020 13388 K20178 VPS8 vacuolar protein sorting-associated protein 8 + cofit
mRNA_5021 13389 K14347 SLC10A7, P7 solute carrier family 10 (sodium/bile acid cotransporter), member 7 + cofit
mRNA_5022 13390 Hypothetical Protein + cofit
mRNA_5023 13391 K17866 DPH2 diphthamide biosynthesis protein 2 - cofit
mRNA_5024 13392 K11124 SMG6, EST1A protein SMG6 + cofit
mRNA_5025 13393 BLAST HECT-type ubiquitin ligase-interacting protein creD [... - cofit
mRNA_5026 13394 K01698 hemB, ALAD porphobilinogen synthase + no data
mRNA_5027 13395 HMMPfam-Cryptococcal mannosyltransferase 1-PF11735 + cofit
mRNA_5028 13396 HMMPfam-Cryptococcal mannosyltransferase 1-PF11735 + cofit
mRNA_5029 13397 HMMPfam-Ornithine decarboxylase antizyme-PF02100,SUPERFAMILY--SSF55729 - cofit

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