Gene info for mRNA_5122 in Rhodosporidium toruloides IFO0880

Name: 13490
Annotation: HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701
Type 1: Protein-coding gene
Located on scaffold scaffold_3, + strand, nucleotides 1,811,957 to 1,814,516
See nucleotide sequence around mRNA_5122 or for all of scaffold scaffold_3

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 13485 and 13486 are separated by 634 nucleotides13486 and 13487 are separated by 550 nucleotides13487 and 13488 are separated by 879 nucleotides13488 and 13489 are separated by 351 nucleotides13489 and 13490 are separated by 442 nucleotides13490 and 13491 are separated by 515 nucleotides13491 and 13492 are separated by 149 nucleotides13492 and 13493 are separated by 177 nucleotides13493 and 13494 are separated by 123 nucleotides13494 and 13495 are separated by 287 nucleotides mRNA_5117: 13485 - KOG0254 Predicted transporter (major facilitator superfamily), at 1,797,781 to 1,800,000 13485 mRNA_5118: 13486 - K05349 bglX beta-glucosidase, at 1,800,635 to 1,803,494 13486 mRNA_5119: 13487 - HMMPfam-LysM domain-PF01476,SMART-Lysin motif-SM00257,SUPERFAMILY--SSF54106, at 1,804,045 to 1,805,977 13487 mRNA_5120: 13488 - K11279 NAP1L1, NRP nucleosome assembly protein 1-like 1, at 1,806,857 to 1,808,752 13488 mRNA_5121: 13489 - K01137 GNS N-acetylglucosamine-6-sulfatase, at 1,809,104 to 1,811,514 13489 mRNA_5122: 13490 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,811,957 to 1,814,516 13490 mRNA_5123: 13491 - K14826 FPR3_4 FK506-binding nuclear protein, at 1,815,032 to 1,816,842 13491 mRNA_5124: 13492 - K13248 PHOSPHO2 pyridoxal phosphate phosphatase PHOSPHO2, at 1,816,992 to 1,818,246 13492 mRNA_5125: 13493 - Interpro Protein of unknown function (DUF3431), at 1,818,424 to 1,820,541 13493 mRNA_5126: 13494 - Hypothetical Protein, at 1,820,665 to 1,821,231 13494 mRNA_5127: 13495 - K07941 ARF6 ADP-ribosylation factor 6, at 1,821,519 to 1,822,822 13495
Locus Name Description Strand Phenotype
mRNA_5117 13485 KOG0254 Predicted transporter (major facilitator superfamily) - cofit
mRNA_5118 13486 K05349 bglX beta-glucosidase - cofit
mRNA_5119 13487 HMMPfam-LysM domain-PF01476,SMART-Lysin motif-SM00257,SUPERFAMILY--SSF54106 - cofit
mRNA_5120 13488 K11279 NAP1L1, NRP nucleosome assembly protein 1-like 1 + no data
mRNA_5121 13489 K01137 GNS N-acetylglucosamine-6-sulfatase - cofit
mRNA_5122 13490 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 + cofit
mRNA_5123 13491 K14826 FPR3_4 FK506-binding nuclear protein - cofit
mRNA_5124 13492 K13248 PHOSPHO2 pyridoxal phosphate phosphatase PHOSPHO2 + no data
mRNA_5125 13493 Interpro Protein of unknown function (DUF3431) - cofit
mRNA_5126 13494 Hypothetical Protein + cofit
mRNA_5127 13495 K07941 ARF6 ADP-ribosylation factor 6 - no data

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