Gene info for mRNA_5153 in Rhodosporidium toruloides IFO0880

Name: 13521
Annotation: HMMPfam-Secretory lipase-PF03583,PIRSF--PIRSF029171,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF53474
Type 1: Protein-coding gene
Located on scaffold scaffold_4, - strand, nucleotides 26,390 to 28,027
See nucleotide sequence around mRNA_5153 or for all of scaffold scaffold_4

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 13516 and 13517 are separated by 439 nucleotides13517 and 13518 are separated by 281 nucleotides13518 and 13519 are separated by 1563 nucleotides13519 and 13520 are separated by 575 nucleotides13520 and 13521 are separated by 225 nucleotides13521 and 13522 are separated by 747 nucleotides13522 and 13523 are separated by 461 nucleotides13523 and 13524 are separated by 812 nucleotides13524 and 13525 are separated by 420 nucleotides13525 and 13526 are separated by 965 nucleotides mRNA_5148: 13516 - K17918 SNX3_12 sorting nexin-3/12, at 17,697 to 18,440 13516 mRNA_5149: 13517 - Hypothetical Protein, at 18,880 to 20,047 13517 mRNA_5150: 13518 - Hypothetical Protein, at 20,329 to 21,379 13518 mRNA_5151: 13519 - HMMPfam-SUR7/PalI family-PF06687, at 22,943 to 24,220 13519 mRNA_5152: 13520 - HMMPfam-Domain of unknown function (DUF4336)-PF14234,SUPERFAMILY--SSF56281, at 24,796 to 26,164 13520 mRNA_5153: 13521 - HMMPfam-Secretory lipase-PF03583,PIRSF--PIRSF029171,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF53474, at 26,390 to 28,027 13521 mRNA_5154: 13522 - HMMPfam-Beta-lactamase superfamily domain-PF12706,SUPERFAMILY--SSF56281, at 28,775 to 30,256 13522 mRNA_5155: 13523 - BLAST unknown [Tremella fuciformis], at 30,718 to 32,151 13523 mRNA_5156: 13524 - K00108 betA, CHDH choline dehydrogenase, at 32,964 to 35,897 13524 mRNA_5157: 13525 - K11976 RNF216 TRIAD3 E3 ubiquitin-protein ligase RNF216, at 36,318 to 38,711 13525 mRNA_5158: 13526 - K15128 MED6 mediator of RNA polymerase II transcription subunit 6, at 39,677 to 40,567 13526
Locus Name Description Strand Phenotype
mRNA_5148 13516 K17918 SNX3_12 sorting nexin-3/12 + cofit
mRNA_5149 13517 Hypothetical Protein + insig.
mRNA_5150 13518 Hypothetical Protein + cofit
mRNA_5151 13519 HMMPfam-SUR7/PalI family-PF06687 - cofit
mRNA_5152 13520 HMMPfam-Domain of unknown function (DUF4336)-PF14234,SUPERFAMILY--SSF56281 - insig.
mRNA_5153 13521 HMMPfam-Secretory lipase-PF03583,PIRSF--PIRSF029171,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF53474 - cofit
mRNA_5154 13522 HMMPfam-Beta-lactamase superfamily domain-PF12706,SUPERFAMILY--SSF56281 + insig.
mRNA_5155 13523 BLAST unknown [Tremella fuciformis] - cofit
mRNA_5156 13524 K00108 betA, CHDH choline dehydrogenase + insig.
mRNA_5157 13525 K11976 RNF216 TRIAD3 E3 ubiquitin-protein ligase RNF216 - cofit
mRNA_5158 13526 K15128 MED6 mediator of RNA polymerase II transcription subunit 6 - no data

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