Gene info for mRNA_5244 in Rhodosporidium toruloides IFO0880

Name: 13612
Annotation: HMMPfam-Glycosyl Hydrolase Family 88-PF07470,SUPERFAMILY--SSF48208
Type 1: Protein-coding gene
Located on scaffold scaffold_4, + strand, nucleotides 251,965 to 253,364
See nucleotide sequence around mRNA_5244 or for all of scaffold scaffold_4

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 13607 and 13608 are separated by 373 nucleotides13608 and 13609 are separated by 284 nucleotides13609 and 13610 are separated by 1023 nucleotides13610 and 13611 are separated by 2693 nucleotides13611 and 13612 are separated by 921 nucleotides13612 and 13613 are separated by 577 nucleotides13613 and 13614 are separated by 222 nucleotides13614 and 13615 are separated by 296 nucleotides13615 and 13616 are separated by 804 nucleotides13616 and 13617 are separated by 449 nucleotides mRNA_5239: 13607 - K10859 ALKBH2 alpha-ketoglutarate-dependent dioxygenase alkB homolog 2, at 236,624 to 237,646 13607 mRNA_5240: 13608 - HMMPfam-Ubiquinol-cytochrome-c reductase complex subunit (QCR10)-PF09796, at 238,020 to 238,702 13608 mRNA_5241: 13609 - K01099 INPP5B_F inositol polyphosphate 5-phosphatase INPP5B/F, at 238,987 to 242,229 13609 mRNA_5242: 13610 - K02932 RP-L5e, RPL5 large subunit ribosomal protein L5e, at 243,253 to 244,505 13610 mRNA_5243: 13611 - KOG1601 GATA-4/5/6 transcription factors, at 247,199 to 251,043 13611 mRNA_5244: 13612 - HMMPfam-Glycosyl Hydrolase Family 88-PF07470,SUPERFAMILY--SSF48208, at 251,965 to 253,364 13612 mRNA_5245: 13613 - KOG2887 Membrane protein involved in ER to Golgi transport, at 253,942 to 254,889 13613 mRNA_5246: 13614 - K00411 UQCRFS1, RIP1, petA ubiquinol-cytochrome c reductase iron-sulfur subunit, at 255,112 to 256,642 13614 mRNA_5247: 13615 - HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 256,939 to 258,074 13615 mRNA_5248: 13616 - KOG2084 Predicted histone tail methylase containing SET domain, at 258,879 to 260,199 13616 mRNA_5249: 13617 - K01535 PMA1, PMA2 H+-transporting ATPase, at 260,649 to 264,628 13617
Locus Name Description Strand Phenotype
mRNA_5239 13607 K10859 ALKBH2 alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 - insig.
mRNA_5240 13608 HMMPfam-Ubiquinol-cytochrome-c reductase complex subunit (QCR10)-PF09796 + cofit
mRNA_5241 13609 K01099 INPP5B_F inositol polyphosphate 5-phosphatase INPP5B/F - cofit
mRNA_5242 13610 K02932 RP-L5e, RPL5 large subunit ribosomal protein L5e - no data
mRNA_5243 13611 KOG1601 GATA-4/5/6 transcription factors + cofit
mRNA_5244 13612 HMMPfam-Glycosyl Hydrolase Family 88-PF07470,SUPERFAMILY--SSF48208 + cofit
mRNA_5245 13613 KOG2887 Membrane protein involved in ER to Golgi transport + no data
mRNA_5246 13614 K00411 UQCRFS1, RIP1, petA ubiquinol-cytochrome c reductase iron-sulfur subunit + cofit
mRNA_5247 13615 HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959 - cofit
mRNA_5248 13616 KOG2084 Predicted histone tail methylase containing SET domain - cofit
mRNA_5249 13617 K01535 PMA1, PMA2 H+-transporting ATPase - no data

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