Gene info for mRNA_5251 in Rhodosporidium toruloides IFO0880

Name: 13619
Annotation: K12867 SYF1, XAB2 pre-mRNA-splicing factor SYF1
Type 1: Protein-coding gene
Located on scaffold scaffold_4, - strand, nucleotides 271,974 to 275,743
See nucleotide sequence around mRNA_5251 or for all of scaffold scaffold_4

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 13614 and 13615 are separated by 296 nucleotides13615 and 13616 are separated by 804 nucleotides13616 and 13617 are separated by 449 nucleotides13617 and 13618 are separated by 2732 nucleotides13618 and 13619 are separated by 197 nucleotides13619 and 13620 are separated by 685 nucleotides13620 and 13621 are separated by 380 nucleotides13621 and 13622 are separated by 716 nucleotides13622 and 13623 are separated by 289 nucleotides13623 and 13624 are separated by 1804 nucleotides mRNA_5246: 13614 - K00411 UQCRFS1, RIP1, petA ubiquinol-cytochrome c reductase iron-sulfur subunit, at 255,112 to 256,642 13614 mRNA_5247: 13615 - HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 256,939 to 258,074 13615 mRNA_5248: 13616 - KOG2084 Predicted histone tail methylase containing SET domain, at 258,879 to 260,199 13616 mRNA_5249: 13617 - K01535 PMA1, PMA2 H+-transporting ATPase, at 260,649 to 264,628 13617 mRNA_5250: 13618 - SUPERFAMILY--SSF101898, at 267,361 to 271,776 13618 mRNA_5251: 13619 - K12867 SYF1, XAB2 pre-mRNA-splicing factor SYF1, at 271,974 to 275,743 13619 mRNA_5252: 13620 - BLAST LPS-assembly protein LptD [Rhizoctonia solani], at 276,429 to 278,610 13620 mRNA_5253: 13621 - Hypothetical Protein, at 278,991 to 279,822 13621 mRNA_5254: 13622 - HMMPfam-10 TM Acyl Transferase domain found in Cas1p-PF07779,HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839, at 280,539 to 283,748 13622 mRNA_5255: 13623 - K12604 CNOT1, NOT1 CCR4-NOT transcription complex subunit 1, at 284,038 to 290,339 13623 mRNA_5256: 13624 - SUPERFAMILY--SSF53448, at 292,144 to 293,863 13624
Locus Name Description Strand Phenotype
mRNA_5246 13614 K00411 UQCRFS1, RIP1, petA ubiquinol-cytochrome c reductase iron-sulfur subunit + cofit
mRNA_5247 13615 HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959 - cofit
mRNA_5248 13616 KOG2084 Predicted histone tail methylase containing SET domain - cofit
mRNA_5249 13617 K01535 PMA1, PMA2 H+-transporting ATPase - no data
mRNA_5250 13618 SUPERFAMILY--SSF101898 - cofit
mRNA_5251 13619 K12867 SYF1, XAB2 pre-mRNA-splicing factor SYF1 - cofit
mRNA_5252 13620 BLAST LPS-assembly protein LptD [Rhizoctonia solani] + cofit
mRNA_5253 13621 Hypothetical Protein - cofit
mRNA_5254 13622 HMMPfam-10 TM Acyl Transferase domain found in Cas1p-PF07779,HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839 - cofit
mRNA_5255 13623 K12604 CNOT1, NOT1 CCR4-NOT transcription complex subunit 1 - no data
mRNA_5256 13624 SUPERFAMILY--SSF53448 - cofit

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