Gene info for mRNA_5257 in Rhodosporidium toruloides IFO0880

Name: 13625
Annotation: K11887 PAAF1, RPN14 proteasomal ATPase-associated factor 1
Type 1: Protein-coding gene
Located on scaffold scaffold_4, + strand, nucleotides 295,850 to 297,525
See nucleotide sequence around mRNA_5257 or for all of scaffold scaffold_4

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 13620 and 13621 are separated by 380 nucleotides13621 and 13622 are separated by 716 nucleotides13622 and 13623 are separated by 289 nucleotides13623 and 13624 are separated by 1804 nucleotides13624 and 13625 are separated by 1986 nucleotides13625 and 13626 are separated by 199 nucleotides13626 and 13627 are separated by 419 nucleotides13627 and 13628 are separated by 756 nucleotides13628 and 13629 are separated by 580 nucleotides13629 and 13630 are separated by 836 nucleotides mRNA_5252: 13620 - BLAST LPS-assembly protein LptD [Rhizoctonia solani], at 276,429 to 278,610 13620 mRNA_5253: 13621 - Hypothetical Protein, at 278,991 to 279,822 13621 mRNA_5254: 13622 - HMMPfam-10 TM Acyl Transferase domain found in Cas1p-PF07779,HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839, at 280,539 to 283,748 13622 mRNA_5255: 13623 - K12604 CNOT1, NOT1 CCR4-NOT transcription complex subunit 1, at 284,038 to 290,339 13623 mRNA_5256: 13624 - SUPERFAMILY--SSF53448, at 292,144 to 293,863 13624 mRNA_5257: 13625 - K11887 PAAF1, RPN14 proteasomal ATPase-associated factor 1, at 295,850 to 297,525 13625 mRNA_5258: 13626 - KOG0538 Glycolate oxidase, at 297,725 to 299,742 13626 mRNA_5259: 13627 - K01424 E3.5.1.1, ansA, ansB L-asparaginase, at 300,162 to 301,995 13627 mRNA_5260: 13628 - K02263 COX4 cytochrome c oxidase subunit 4, at 302,752 to 303,807 13628 mRNA_5261: 13629 - K01173 ENDOG endonuclease G, mitochondrial, at 304,388 to 306,039 13629 mRNA_5262: 13630 - K00161 PDHA, pdhA pyruvate dehydrogenase E1 component alpha subunit, at 306,876 to 308,801 13630
Locus Name Description Strand Phenotype
mRNA_5252 13620 BLAST LPS-assembly protein LptD [Rhizoctonia solani] + cofit
mRNA_5253 13621 Hypothetical Protein - cofit
mRNA_5254 13622 HMMPfam-10 TM Acyl Transferase domain found in Cas1p-PF07779,HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839 - cofit
mRNA_5255 13623 K12604 CNOT1, NOT1 CCR4-NOT transcription complex subunit 1 - no data
mRNA_5256 13624 SUPERFAMILY--SSF53448 - cofit
mRNA_5257 13625 K11887 PAAF1, RPN14 proteasomal ATPase-associated factor 1 + cofit
mRNA_5258 13626 KOG0538 Glycolate oxidase - cofit
mRNA_5259 13627 K01424 E3.5.1.1, ansA, ansB L-asparaginase - cofit
mRNA_5260 13628 K02263 COX4 cytochrome c oxidase subunit 4 + no data
mRNA_5261 13629 K01173 ENDOG endonuclease G, mitochondrial + no data
mRNA_5262 13630 K00161 PDHA, pdhA pyruvate dehydrogenase E1 component alpha subunit - no data

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