Gene info for mRNA_5333 in Rhodosporidium toruloides IFO0880

Name: 13701
Annotation: ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SUPERFAMILY--SSF69065
Type 1: Protein-coding gene
Located on scaffold scaffold_4, - strand, nucleotides 478,191 to 479,250
See nucleotide sequence around mRNA_5333 or for all of scaffold scaffold_4

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 13696 and 13697 are separated by 148 nucleotides13697 and 13698 are separated by 1407 nucleotides13698 and 13699 are separated by 486 nucleotides13699 and 13700 are separated by 133 nucleotides13700 and 13701 are separated by 235 nucleotides13701 and 13702 are separated by 246 nucleotides13702 and 13703 are separated by 299 nucleotides13703 and 13704 are separated by 279 nucleotides13704 and 13705 are separated by 215 nucleotides13705 and 13706 are separated by 483 nucleotides mRNA_5328: 13696 - HMMPfam-ATP adenylyltransferase-PF09830,SUPERFAMILY--SSF54197, at 465,608 to 466,886 13696 mRNA_5329: 13697 - K02212 MCM4, CDC54 DNA replication licensing factor MCM4, at 467,035 to 469,864 13697 mRNA_5330: 13698 - BLAST ZYRO0C04598p [Zygosaccharomyces rouxii], at 471,272 to 473,464 13698 mRNA_5331: 13699 - SUPERFAMILY--SSF52047, at 473,951 to 475,290 13699 mRNA_5332: 13700 - K01904 4CL 4-coumarate--CoA ligase, at 475,424 to 477,955 13700 mRNA_5333: 13701 - ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SUPERFAMILY--SSF69065, at 478,191 to 479,250 13701 mRNA_5334: 13702 - K14563 NOP1, FBL rRNA 2'-O-methyltransferase fibrillarin, at 479,497 to 481,330 13702 mRNA_5335: 13703 - HMMPfam-Domain of unknown function (DUF4202)-PF13875, at 481,630 to 482,657 13703 mRNA_5336: 13704 - K14777 DDX47, RRP3 ATP-dependent RNA helicase DDX47/RRP3, at 482,937 to 484,688 13704 mRNA_5337: 13705 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 484,904 to 487,998 13705 mRNA_5338: 13706 - K00891 E2.7.1.71, aroK, aroL shikimate kinase, at 488,482 to 491,424 13706
Locus Name Description Strand Phenotype
mRNA_5328 13696 HMMPfam-ATP adenylyltransferase-PF09830,SUPERFAMILY--SSF54197 + cofit
mRNA_5329 13697 K02212 MCM4, CDC54 DNA replication licensing factor MCM4 - cofit
mRNA_5330 13698 BLAST ZYRO0C04598p [Zygosaccharomyces rouxii] - cofit
mRNA_5331 13699 SUPERFAMILY--SSF52047 + insig.
mRNA_5332 13700 K01904 4CL 4-coumarate--CoA ligase + cofit
mRNA_5333 13701 ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SUPERFAMILY--SSF69065 - insig.
mRNA_5334 13702 K14563 NOP1, FBL rRNA 2'-O-methyltransferase fibrillarin - cofit
mRNA_5335 13703 HMMPfam-Domain of unknown function (DUF4202)-PF13875 + cofit
mRNA_5336 13704 K14777 DDX47, RRP3 ATP-dependent RNA helicase DDX47/RRP3 + no data
mRNA_5337 13705 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701 - cofit
mRNA_5338 13706 K00891 E2.7.1.71, aroK, aroL shikimate kinase + cofit

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