Gene info for mRNA_5339 in Rhodosporidium toruloides IFO0880

Name: 13707
Annotation: KOG4771 Nucleolar protein (NOP16) involved in 60S ribosomal subunit biogenesis
Type 1: Protein-coding gene
Located on scaffold scaffold_4, - strand, nucleotides 491,578 to 492,823
See nucleotide sequence around mRNA_5339 or for all of scaffold scaffold_4

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 13702 and 13703 are separated by 299 nucleotides13703 and 13704 are separated by 279 nucleotides13704 and 13705 are separated by 215 nucleotides13705 and 13706 are separated by 483 nucleotides13706 and 13707 are separated by 153 nucleotides13707 and 13708 are separated by 178 nucleotides13708 and 13709 are separated by 646 nucleotides13709 and 13710 are separated by 237 nucleotides13710 and 13711 are separated by 833 nucleotides13711 and 13712 are separated by 37 nucleotides mRNA_5334: 13702 - K14563 NOP1, FBL rRNA 2'-O-methyltransferase fibrillarin, at 479,497 to 481,330 13702 mRNA_5335: 13703 - HMMPfam-Domain of unknown function (DUF4202)-PF13875, at 481,630 to 482,657 13703 mRNA_5336: 13704 - K14777 DDX47, RRP3 ATP-dependent RNA helicase DDX47/RRP3, at 482,937 to 484,688 13704 mRNA_5337: 13705 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 484,904 to 487,998 13705 mRNA_5338: 13706 - K00891 E2.7.1.71, aroK, aroL shikimate kinase, at 488,482 to 491,424 13706 mRNA_5339: 13707 - KOG4771 Nucleolar protein (NOP16) involved in 60S ribosomal subunit biogenesis, at 491,578 to 492,823 13707 mRNA_5340: 13708 - K01092 E3.1.3.25, IMPA, suhB myo-inositol-1(or 4)-monophosphatase, at 493,002 to 494,592 13708 mRNA_5341: 13709 - KOG0692 Pentafunctional AROM protein, at 495,239 to 496,655 13709 mRNA_5342: 13710 - KOG0692 Pentafunctional AROM protein, at 496,893 to 498,783 13710 mRNA_5343: 13711 - K01835 pgm phosphoglucomutase, at 499,617 to 502,031 13711 mRNA_5344: 13712 - KOG4176 Uncharacterized conserved protein, at 502,069 to 503,147 13712
Locus Name Description Strand Phenotype
mRNA_5334 13702 K14563 NOP1, FBL rRNA 2'-O-methyltransferase fibrillarin - cofit
mRNA_5335 13703 HMMPfam-Domain of unknown function (DUF4202)-PF13875 + cofit
mRNA_5336 13704 K14777 DDX47, RRP3 ATP-dependent RNA helicase DDX47/RRP3 + no data
mRNA_5337 13705 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701 - cofit
mRNA_5338 13706 K00891 E2.7.1.71, aroK, aroL shikimate kinase + cofit
mRNA_5339 13707 KOG4771 Nucleolar protein (NOP16) involved in 60S ribosomal subunit biogenesis - no data
mRNA_5340 13708 K01092 E3.1.3.25, IMPA, suhB myo-inositol-1(or 4)-monophosphatase - cofit
mRNA_5341 13709 KOG0692 Pentafunctional AROM protein + cofit
mRNA_5342 13710 KOG0692 Pentafunctional AROM protein + cofit
mRNA_5343 13711 K01835 pgm phosphoglucomutase + cofit
mRNA_5344 13712 KOG4176 Uncharacterized conserved protein - cofit

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