Gene info for mRNA_5417 in Rhodosporidium toruloides IFO0880

Name: 13785
Annotation: ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701
Type 1: Protein-coding gene
Located on scaffold scaffold_5, - strand, nucleotides 53,998 to 56,725
See nucleotide sequence around mRNA_5417 or for all of scaffold scaffold_5

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 13780 and 13781 are separated by 550 nucleotides13781 and 13782 are separated by 122 nucleotides13782 and 13783 are separated by 1067 nucleotides13783 and 13784 are separated by 1849 nucleotides13784 and 13785 are separated by 145 nucleotides13785 and 13786 are separated by 193 nucleotides13786 and 13787 are separated by 305 nucleotides13787 and 13788 are separated by 350 nucleotides13788 and 13789 are separated by 449 nucleotides13789 and 13790 are separated by 250 nucleotides mRNA_5412: 13780 - ProSitePatterns-Protein kinases ATP-binding region signature.-PS00107,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 41,309 to 43,272 13780 mRNA_5413: 13781 - ProSitePatterns-Protein kinases ATP-binding region signature.-PS00107,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 43,823 to 46,039 13781 mRNA_5414: 13782 - HMMPfam-Glycosyl transferase family 2-PF13704, at 46,162 to 47,875 13782 mRNA_5415: 13783 - HMMPfam-Tyrosyl-DNA phosphodiesterase-PF06087,SUPERFAMILY--SSF56024, at 48,943 to 50,652 13783 mRNA_5416: 13784 - K04496 CTBP C-terminal binding protein, at 52,502 to 53,852 13784 mRNA_5417: 13785 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 53,998 to 56,725 13785 mRNA_5418: 13786 - K01502 E3.5.5.7 aliphatic nitrilase, at 56,919 to 58,432 13786 mRNA_5419: 13787 - Interpro Cut8, nuclear proteasome tether protein, at 58,738 to 60,106 13787 mRNA_5420: 13788 - Hypothetical Protein, at 60,457 to 62,427 13788 mRNA_5421: 13789 - Interpro Domain of unknown function (DUF5102) 0, at 62,877 to 64,571 13789 mRNA_5422: 13790 - HMMPfam-Domain of unknown function (DUF336)-PF03928,SUPERFAMILY--SSF143744, at 64,822 to 65,544 13790
Locus Name Description Strand Phenotype
mRNA_5412 13780 ProSitePatterns-Protein kinases ATP-binding region signature.-PS00107,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112 - cofit
mRNA_5413 13781 ProSitePatterns-Protein kinases ATP-binding region signature.-PS00107,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112 - cofit
mRNA_5414 13782 HMMPfam-Glycosyl transferase family 2-PF13704 + cofit
mRNA_5415 13783 HMMPfam-Tyrosyl-DNA phosphodiesterase-PF06087,SUPERFAMILY--SSF56024 + insig.
mRNA_5416 13784 K04496 CTBP C-terminal binding protein + cofit
mRNA_5417 13785 ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 - cofit
mRNA_5418 13786 K01502 E3.5.5.7 aliphatic nitrilase + cofit
mRNA_5419 13787 Interpro Cut8, nuclear proteasome tether protein - cofit
mRNA_5420 13788 Hypothetical Protein - cofit
mRNA_5421 13789 Interpro Domain of unknown function (DUF5102) 0 + cofit
mRNA_5422 13790 HMMPfam-Domain of unknown function (DUF336)-PF03928,SUPERFAMILY--SSF143744 + cofit

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